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Hi.
I noticed this bit:
<snip>
Select either one of the detected httpd paths on the list, OR enter the
path you wish to use:
/usr/sbin/apache
/usr/sbin/apache2
[1]: /caprisa/usr/local/apache2/bin/apachectl
</snip>
It looks like you've given it the path to apachectl rather than apache.
It needs to know the path to the apache binary itself (sometimes also
called httpd or apache2), not the apachectl binary.
Although I can't say exactly what would happen if you gave it the
apachectl binary, as I've never tried it, its safer to try again with
the correct one before going any further.
Also, to do an absolutely clean reconfiguration after problems like
this, you need to append the '--clean' switch to the call to
configure.pl, eg.:
perl bin/configure.pl -r martRegistry.xml --clean
If you don't use the --clean switch then it will attempt to reuse the
cached compiled configuration from your previous attempt, which
potentially could cause problems if the previous attempt failed.
cheers,
Richard
[EMAIL PROTECTED] wrote:
> Hi Syed,
> I did a clean reconfiguration this time I received a warning during
> configuration as follows.
>> perl bin/configure.pl -r conf/martDBLocation.xml
>
> Do you want to install in API only mode [y/n] [n]:
>
> Checking prerequisites ...[Looks good]
>
>
> DO YOU WANT TO USE EXISTING SERVER CONFIGURATION [y/n] [y]: n
> Checking several common Apache locations...done.
>
> Select either one of the detected httpd paths on the list, OR enter the
> path you wish to use:
> /usr/sbin/apache
> /usr/sbin/apache2
> [1]: /caprisa/usr/local/apache2/bin/apachectl
> Got usable Apache in /caprisa/usr/local/apache2/bin/apachectl, probing for
> version & ModPerl configuration
> Have Apache DSO-support and ModPerl library file present, configuring
> ModPerl in httpd.conf.
>
> Enter the server host OR default [ruth]:
>
> Enter the server port OR default [5555]:
>
> Enter proxy OR default :
>
> Enter the required script location OR default [biomart]:
> Libdir /home/ruby/prj/biomart/biomart-test2/lib is not in @INC, adding to
> @INC
>
> Processing Cached Registry:
> /home/ruby/prj/biomart/biomart-test2/conf/cachedRegistries/martDBLocation.xml.cached
>
>
>
> Then I receive an error when I try accessing the web application as follows.
>
> [Thu Mar 22 17:32:06 2007] [error] [client 127.0.0.1] Use of uninitialized
> value in concatenation (.) or string at
> /usr/lib/perl5/ModPerl/RegistryCooker.pm line 636.\n, referer:
> http://localhost:5555/
>
> Am attaching the current conf/httpd.conf
>
>
> Allan.
>
>> Hi Allan
>> I can see that there are configuration directives completely missing
>> from your httpd.conf.
>>
>> Please do a clean check out, and reconfigure again.
>>
>> Cheers
>> Syed
>>
>>
>> On Thu, 2007-03-22 at 17:01 +0200, allank wrote:
>>> Hi all,
>>> I am experiencing an error running Biomart 0.5, the web browser reports
>>> internal server error a look at the logs (of my biomart-perl directory)
>>> shows a "No such file or directory: exec of .. cgi-bin/martview.
>>> The configuration process(perl bin/configure.pl -r
>>> conf/myRegisteration.xml) goes through successfully, but I get an
>>> internal server error when I try accessing the web resource of my newly
>>> installed biomart via a browser.
>>>
>>> Allan.
>>>
>> --
>> ======================================
>> Syed Haider.
>> EMBL-European Bioinformatics Institute
>> Wellcome Trust Genome Campus, Hinxton,
>> Cambridge CB10 1SD, UK.
>> ======================================
>>
>>
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