Hi Jay You can still make sense out of exon data by using the Attribute RANK, which refers to the order of exons in which they appear.
Cheers Syed On Mon, 2007-04-16 at 10:23 +0100, Richard Holland wrote: > -----BEGIN PGP SIGNED MESSAGE----- > Hash: SHA1 > > I'm forwarding this to mart-dev in case someone there can help you. > > cheers, > Richard > -----BEGIN PGP SIGNATURE----- > Version: GnuPG v1.4.2.2 (GNU/Linux) > Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org > > iD8DBQFGI0Ci4C5LeMEKA/QRAoEVAKCZ9wjjk0kXgRKByhzTIEVngrypUwCfYtTw > vzYSqnAD1aBE3oanKEpIw/0= > =MxPV > -----END PGP SIGNATURE----- > email message attachment ([ensembl-dev] exon) > > -------- Forwarded Message -------- > > From: Jay an <[EMAIL PROTECTED]> > > Reply-To: [EMAIL PROTECTED] > > To: [EMAIL PROTECTED] > > Subject: [ensembl-dev] exon > > Date: Fri, 13 Apr 2007 23:25:39 -0700 (PDT) > > > > hello, > > > > I got exon data from biomart data mining tool. but I found > > for multi exons, the exon positions are not sorted. > > can you please tell me why? > > > > for example > > >Y|ENSG00000092377|6838727|7019724|1569| > > 6906254;6953076;6949490;6838727;6840129| > > 6906284;6953125;6949578;6839023;6840213|7019534|7019724| > > 6999774;7015308;6998237;6906254;7018130;6953076;6949490;6998761;6838727;6840129;7019513;6991938;6971021;6999601;7002601;7008773;7014331;7013939|6999871;7015473;6998369;6906284;7018231;6953183;6949578;6998902;6839023;6840213;7019724;6992190;6971166;6999664;7002661;7008894;7014458;7014013|protein_coding > > 5'UTR start positons: > > ...6906254;6953076;6949490... > > > > you can find 6906254 < 6953076 > 6949490 > > > > > > > > ____________________________________________________________________ > > Ahhh...imagining that irresistible "new car" smell? > > Check out new cars at Yahoo! Autos. -- ====================================== Syed Haider. EMBL-European Bioinformatics Institute Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. ======================================
