Now that I can get biomart up and running, I'm working on using my own data. (gffs that load into a mysql
I'm trying to use the gff2biomart.pl script that is part of the GMOD tools. I'm able to load data into a database, but when I try to configure biomart I get errors about missing tables. Also, Marteditor complains that there are no data sets in the database. Does anyone know if gff2biomart5.pl works with the most recent biomart release? I'm having a tough time isolating out my configuration mistakes. If anyone has advice I'd be grateful. I'm currently trying to load the gffs I use to create a seqfeature::store database (for gbrowse) into a biomart database, but I could just as easily dump the data out of a chado database into a format that biomart likes. Thanks, -- Eric Ross Alejandro Sánchez Lab Howard Hughes Medical Institute Department of Neurobiology and Anatomy University of Utah Wintrobe 531 [EMAIL PROTECTED] 801-585-3674
