That explains my problems. Thanks. I'll work at creating my own configuration. I appreciate the help.
Do you use gff output from the chado dumper? I hope to eventually dump my data from chado into biomart. On 5/2/07 12:48 PM, "Don Gilbert" <[EMAIL PROTECTED]> wrote: > > > Eric, > > http://gmod.cvs.sourceforge.net/gmod/schema/GMODTools/bin/gff2biomart5.pl > > This converts genome GFF annotations into BioMart-compliant tables and > the XML interface. The caveat is that I haven't yet updated it from > version 0.3 of biomart to later releases. > > This isn't as bad as might be, as the primary biomart-table output is > usable with later releases. It is the BioMart configurations (XML > probably, metadata table surely) which need changes for the later > versions. You can instead use the BioMart martj editor to create > these configurations. I.e. it isn't as automatic as it could be, yet. > > I will be updating gff2biomart this summer. > > - Don > > -- d.gilbert--bioinformatics--indiana-u--bloomington-in-47405 > -- [EMAIL PROTECTED]://marmot.bio.indiana.edu/ -- Eric Ross Alejandro Sánchez Lab Howard Hughes Medical Institute Department of Neurobiology and Anatomy University of Utah Wintrobe 531 [EMAIL PROTECTED] 801-585-3674
