I keep getting the following message when linking two of my DBs, either
directly or via a pointer filter:
ERROR: caught BioMart::Exception::Query: returning undef ... missing
attributes for your exportable?
Stacktrace:
Exception::Class::Base::throw
/home/snr02/work/biomart/0.5/biomart-perl/lib/BioMart/ResultTable.pm:
140
BioMart::ResultTable::_new
/home/snr02/work/biomart/0.5/biomart-perl/lib/BioMart/RootI.pm:42
BioMart::RootI::new
/home/snr02/work/biomart/0.5/biomart-perl/lib/BioMart/DatasetI.pm:1102
BioMart::DatasetI::getResultTable
/home/snr02/work/biomart/0.5/biomart-perl/lib/BioMart/QueryRunner.pm:
582
BioMart::QueryRunner::_processPath
/home/snr02/work/biomart/0.5/biomart-perl/lib/BioMart/QueryRunner.pm:
327
BioMart::QueryRunner::_getResultTable
/home/snr02/work/biomart/0.5/biomart-perl/lib/BioMart/QueryRunner.pm:
171
BioMart::QueryRunner::execute
/home/snr02/work/biomart/0.5/biomart-perl/lib/BioMart/Web.pm:1848
(eval)
/home/snr02/work/biomart/0.5/biomart-perl/lib/BioMart/Web.pm:1648
BioMart::Web::handle_request
/home/snr02/work/biomart/0.5/biomart-perl/cgi-bin/martview:84
(eval) /home/snr02/work/biomart/0.5/biomart-perl/cgi-bin/martview:83
ModPerl::ROOT::ModPerl::Registry::
home_snr02_work_biomart_0_2e5_biomart_2dperl_cgi_2dbin_martview::
handler
/usr/local/apache-2.0.55/lib/perl5/site_perl/5.8.8/x86_64-linux-
thread-multi/ModPerl/RegistryCooker.pm:203
(eval)
/usr/local/apache-2.0.55/lib/perl5/site_perl/5.8.8/x86_64-linux-
thread-multi/ModPerl/RegistryCooker.pm:203
ModPerl::RegistryCooker::run
/usr/local/apache-2.0.55/lib/perl5/site_perl/5.8.8/x86_64-linux-
thread-multi/ModPerl/RegistryCooker.pm:169
ModPerl::RegistryCooker::default_handler
/usr/local/apache-2.0.55/lib/perl5/site_perl/5.8.8/x86_64-linux-
thread-multi/ModPerl/Registry.pm:30
ModPerl::Registry::handler -e:0
(eval) -e:0
The attribute it's looking for is there and I can query it within a
single dataset, it just doesn't seem to be loaded into the attribute
lists when used to link.
Any suggestions?
-s
--
Seth Redmond
Scientific Programmer, VectorBase
Kafatos / Christophides Groups
Div. Cell and Molecular Biology
Imperial College, London
[EMAIL PROTECTED]
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