Hi Seth could you please tell me which version of MartEditor you are using ? and could you send your XMLs please.
Many thanks Syed On Mon, 2007-06-11 at 15:30 +0100, seth redmond wrote: > I keep getting the following message when linking two of my DBs, either > directly or via a pointer filter: > > > ERROR: caught BioMart::Exception::Query: returning undef ... missing > > attributes for your exportable? > > > > Stacktrace: > > Exception::Class::Base::throw > > /home/snr02/work/biomart/0.5/biomart-perl/lib/BioMart/ResultTable.pm: > > 140 > > BioMart::ResultTable::_new > > /home/snr02/work/biomart/0.5/biomart-perl/lib/BioMart/RootI.pm:42 > > BioMart::RootI::new > > /home/snr02/work/biomart/0.5/biomart-perl/lib/BioMart/DatasetI.pm:1102 > > BioMart::DatasetI::getResultTable > > /home/snr02/work/biomart/0.5/biomart-perl/lib/BioMart/QueryRunner.pm: > > 582 > > BioMart::QueryRunner::_processPath > > /home/snr02/work/biomart/0.5/biomart-perl/lib/BioMart/QueryRunner.pm: > > 327 > > BioMart::QueryRunner::_getResultTable > > /home/snr02/work/biomart/0.5/biomart-perl/lib/BioMart/QueryRunner.pm: > > 171 > > BioMart::QueryRunner::execute > > /home/snr02/work/biomart/0.5/biomart-perl/lib/BioMart/Web.pm:1848 > > (eval) > > /home/snr02/work/biomart/0.5/biomart-perl/lib/BioMart/Web.pm:1648 > > BioMart::Web::handle_request > > /home/snr02/work/biomart/0.5/biomart-perl/cgi-bin/martview:84 > > (eval) /home/snr02/work/biomart/0.5/biomart-perl/cgi-bin/martview:83 > > ModPerl::ROOT::ModPerl::Registry:: > > home_snr02_work_biomart_0_2e5_biomart_2dperl_cgi_2dbin_martview:: > > handler > > /usr/local/apache-2.0.55/lib/perl5/site_perl/5.8.8/x86_64-linux- > > thread-multi/ModPerl/RegistryCooker.pm:203 > > (eval) > > /usr/local/apache-2.0.55/lib/perl5/site_perl/5.8.8/x86_64-linux- > > thread-multi/ModPerl/RegistryCooker.pm:203 > > ModPerl::RegistryCooker::run > > /usr/local/apache-2.0.55/lib/perl5/site_perl/5.8.8/x86_64-linux- > > thread-multi/ModPerl/RegistryCooker.pm:169 > > ModPerl::RegistryCooker::default_handler > > /usr/local/apache-2.0.55/lib/perl5/site_perl/5.8.8/x86_64-linux- > > thread-multi/ModPerl/Registry.pm:30 > > ModPerl::Registry::handler -e:0 > > (eval) -e:0 > > The attribute it's looking for is there and I can query it within a > single dataset, it just doesn't seem to be loaded into the attribute > lists when used to link. > > Any suggestions? > > -s > > -- ====================================== Syed Haider. EMBL-European Bioinformatics Institute Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. ======================================
