On Mon, 2007-07-09 at 09:11 +0100, Syed Haider wrote:
> Hi Mathew
> With reference to both the threads, one for DAS 'dasRegionFeature' and
> the other one for installation, I do not know how can you query DAS
> server if you are getting problems during install. for dasRegionFeature,
> you probably have the latest up to date code and secondarily if you are
> having install level problems, the rest should not work anyways.
> I would say, check out a latest copy under windows, and please try it
^^^^^
Correction : I mean under Linux, not Windows :)
> from the beginning and use this registry instead
>
> perl bin/configure.pl -r conf/martDBLocation.xml --clean
>
> For the error, if you get this again:
> Connecting to localhost[127.0.0.1]:9002... failed: Connection refused.
>
> could you please send me the contents of error_log and httpd.conf once
> you have done this from start.
>
> also please check if you do not have to set proxy env. variable for wget
> on your network.
>
> Cheers
> syed
>
>
> On Sat, 2007-07-07 at 10:53 +1000, Matthew Hobbs wrote:
> > Thanks for trying to help.
> >
> > Syed Haider wrote:
> > > your XMLs look fine to me, the attribute (chrStart) does exist.
> >
> > good!
> >
> > Just
> > > to further your testing, I would say instead of chrStart use chrEnd
> > > twice and see if it works. your exportable's attributes key would look
> > > like:
> > >
> > > attributes = symbol_list,chrEnd,chrEnd,orientation
> >
> > done
> >
> >
> > > I know it will fetch incorrect data but for debugging on your XML, would
> > > be helpful. and please do a --clean run of configure script every time
> > > you change your XML, followed by a kill and restart of your apache to
> > > see the changes.
> > > hope this helps.
> >
> > Now get this:
> >
> > Attribute 'chrEnd' not found in dataset default.btaurus
> >
> > Matthew
--
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Syed Haider.
EMBL-European Bioinformatics Institute
Wellcome Trust Genome Campus, Hinxton,
Cambridge CB10 1SD, UK.
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