-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 You need to change the settings.conf file so that the line referring to /usr/sbin/httpd refers to the actual location of your Apache httpd binary.
cheers, Richard Joel Hedlund wrote: > Hi! > > I can't install standalone biomart on ubuntu 7.04. Could you please help > me? Output from configure script follows below. > > /Joel Hedlund > > Phd Student > IFM Bioinformatics > Linköping University > Sweden > > > > > $ perl bin/configure.pl -r conf/registryURLPointer.xml >> >> Do you want to install in API only mode [y/n] [n]: >> Checking prerequisites ...[Looks good] Use of uninitialized value in >> string ne at >> /media/sda8/yohell/download/biomart/biomart-perl/bin/configureBioMart.pl >> line 84. >> Use of uninitialized value in regexp compilation at >> /media/sda8/yohell/download/biomart/biomart-perl/bin/configureBioMart.pl >> line 86. >> >> rm >> /media/sda8/yohell/download/biomart/biomart-perl/conf/templates/default/*.ttcrm: >> cannot remove >> `/media/sda8/yohell/download/biomart/biomart-perl/conf/templates/default/*.ttc': >> No such file or directory >> >> APACHE: /usr/sbin/httpd >> HOST: test.biomart.org >> PORT: 9002 >> PROXY: LOCATION: biomart >> >> You can change the above configuration by editing >> "biomart-perl/conf/settings.conf" >> >> >> >> No valid httpd binary specified, skipping Apache version and mod_perl >> checks. No >> httpd.conf will be generated. >> Use of uninitialized value in string eq at >> /media/sda8/yohell/download/biomart/biomart-perl/bin/configureBioMart.pl >> line 182. >> Libdir /media/sda8/yohell/download/biomart/biomart-perl/lib is not in >> @INC, adding to @INC >> >> Processing Cached Registry: >> /media/sda8/yohell/download/biomart/biomart-perl/conf/cachedRegistries/registryURLPointer.xml.cached >> >> >> [EMAIL PROTECTED]:/yolocal/download/biomart/biomart-perl$ > > -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.2.2 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org iD8DBQFGzaLg4C5LeMEKA/QRAk51AJwIjrEkEDLhCuWQvFD9l3EbbslOPgCgn0cw bCmc5Qg5wS2YFFLl+nDkmh8= =7D7A -----END PGP SIGNATURE-----
