Dear All, I'd like to install BioMart to automate some queries with Ensembl. For this I don't really understand why I need apache - so is there a way to install the BioMart perl module without apache?
So far I've installed all the dependencies and when I run BioMart I've got the following message: ---------------------------------------------------------------------------- mkdir: cannot create directory `PATH': File exists mkdir: cannot create directory `TO': File exists mkdir: cannot create directory `YOU': File exists mkdir: cannot create directory `REGISTRY': File exists mkdir: cannot create directory `FILE': File exists mkdir: cannot create directory `UNDER': File exists mkdir: cannot create directory `biomart-perl/conf/cachedRegistries': No such file or directory cp: `to': specified destination directory does not exist Try `cp --help' for more information. sh: line 1: http://www.biomart.org/biomart/martservice?type=registry: No such file or directory Unsuccessful stat on filename containing newline at old/biomart-perl/lib//BioMart/Initializer.pm line 310. Cached Registry Unavailable... Unsuccessful stat on filename containing newline at old/biomart-perl/lib//BioMart/Initializer.pm line 328. Unsuccessful stat on filename containing newline at old/biomart-perl/lib//BioMart/Initializer.pm line 334. Running Complete Clean... Unable to open configuration file 'PATH TO YOU REGISTRY FILE UNDER biomart-perl/conf/. For Biomart Central Registry navigate to http://www.biomart.org/biomart/martservice?type=registry', check file existence and permissions Is that normal? ---------------------------------------------------- Thanks for your help, Best wishes, Emmanuel
