Hi,
I have configured my own dataset, I filled the diffreent registry file in
the directory conf on biomart-perl folder.
When I lauch the command perl bin/configure.pl
conf/registryURLPointer.xml, I get this error.
Checking prerequisites ...[Looks good]
APACHE: /usr/sbin/apache2
HOST: localhost
PORT: 80
PROXY:
LOCATION: biomart
APXS/2:
You can change the above configuration by editing
"biomart-perl/conf/settings.conf"
Got usable Apache in /usr/sbin/apache2, probing for version & ModPerl
configuration
Have Apache DSO-support and ModPerl library file present, configuring
ModPerl in httpd.conf.
Libdir /home/cropdesign/biomart/biomart-perl/lib is not in @INC, adding to
@INC
Cached Registry Unavailable...
Running Complete Clean...
Problems with the web server: 500 Can't connect to localhost:80 (connect:
Connection refused)
ERROR something wrong with your registry: Problems with the retrieval of
dataset configuration
Please check:
that your mart Registry files contains correct connection
params,
that you are using the correct version on XML::Simple,
that BioMart databases contain a populated meta_conf
tables and
that you have set martUser correctly if you are running in
restricted data
access mode (populated meta_conf__user__dm)
Trace begun at
/home/cropdesign/biomart/biomart-perl/bin/../lib/BioMart/Initializer.pm
line 254
BioMart::Initializer::_init('BioMart::Initializer=HASH(0xa4a2c68)',
'registryFile',
'/home/cropdesign/biomart/biomart-perl/conf/registryURLPointer.xml',
'action', 'cached', 'mode', 'memory') called at
/home/cropdesign/biomart/biomart-perl/bin/../lib/BioMart/Initializer.pm
line 377
BioMart::Initializer::init_clean('BioMart::Initializer=HASH(0xa4a2c68)',
'registryFile',
'/home/cropdesign/biomart/biomart-perl/conf/registryURLPointer.xml',
'action', 'cached', 'mode', 'memory') called at
/home/cropdesign/biomart/biomart-perl/bin/../lib/BioMart/Initializer.pm
line 328
BioMart::Initializer::init_cached('BioMart::Initializer=HASH(0xa4a2c68)',
'registryFile',
'/home/cropdesign/biomart/biomart-perl/conf/registryURLPointer.xml',
'action', 'cached', 'mode', 'memory') called at
/home/cropdesign/biomart/biomart-perl/bin/../lib/BioMart/Initializer.pm
line 168
BioMart::Initializer::_new('BioMart::Initializer=HASH(0xa4a2c68)',
'registryFile',
'/home/cropdesign/biomart/biomart-perl/conf/registryURLPointer.xml',
'action', 'cached', 'mode', 'memory') called at
/home/cropdesign/biomart/biomart-perl/bin/../lib/BioMart/RootI.pm line 64
BioMart::RootI::new('BioMart::Initializer', 'registryFile',
'/home/cropdesign/biomart/biomart-perl/conf/registryURLPointer.xml',
'action', 'cached', 'mode', 'memory') called at
/home/cropdesign/biomart/biomart-perl/bin/configureBioMart.pl line 330
eval {...} at
/home/cropdesign/biomart/biomart-perl/bin/configureBioMart.pl line 329
Do you have an idea on what could be wrong, I have no errorlog created.
Best regards,
Bérénice
Berenice Wulbrecht
Phone: +32 9 242 9172, E-Mail: [email protected]
Postal Address: CropDesign N.V., - - CD2, 9052 Gent (Zwijnaarde), Belgium
CropDesign N.V. - A BASF Plant Science Company
CropDesign N.V.
Technologiepark 3
B-9052 Gent
Belgium
General Telephone: +32-9-241 50 80
Fax: +32-9-241 50 89
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