Hi Berenice, For you first mart to build, as you described you built it with MartBuilder and configed it with MartEditor, and it seemed you've successfully Exported your configuration from MartEditor to the DB. Now what you want is to prepare a registry file to include the mart dataset you've just made. To do this, please follow one of the registry example files under conf folder named: martDBLocation.xml (not registryURLPointer.xml).
Please give it a try, feel free to write to us if you still have problems. Thanks, Junjun ________________________________ From: [email protected] [mailto:[email protected]] On Behalf Of [email protected] Sent: Thursday, February 19, 2009 1:01 PM To: [email protected] Subject: [mart-dev] Error Stating MartView Hi, I have configured my own dataset, I filled the diffreent registry file in the directory conf on biomart-perl folder. When I lauch the command perl bin/configure.pl conf/registryURLPointer.xml, I get this error. Checking prerequisites ...[Looks good] APACHE: /usr/sbin/apache2 HOST: localhost PORT: 80 PROXY: LOCATION: biomart APXS/2: You can change the above configuration by editing "biomart-perl/conf/settings.conf" Got usable Apache in /usr/sbin/apache2, probing for version & ModPerl configuration Have Apache DSO-support and ModPerl library file present, configuring ModPerl in httpd.conf. Libdir /home/cropdesign/biomart/biomart-perl/lib is not in @INC, adding to @INC Cached Registry Unavailable... Running Complete Clean... Problems with the web server: 500 Can't connect to localhost:80 (connect: Connection refused) ERROR something wrong with your registry: Problems with the retrieval of dataset configuration Please check: that your mart Registry files contains correct connection params, that you are using the correct version on XML::Simple, that BioMart databases contain a populated meta_conf tables and that you have set martUser correctly if you are running in restricted data access mode (populated meta_conf__user__dm) Trace begun at /home/cropdesign/biomart/biomart-perl/bin/../lib/BioMart/Initializer.pm line 254 BioMart::Initializer::_init('BioMart::Initializer=HASH(0xa4a2c68)', 'registryFile', '/home/cropdesign/biomart/biomart-perl/conf/registryURLPointer.xml', 'action', 'cached', 'mode', 'memory') called at /home/cropdesign/biomart/biomart-perl/bin/../lib/BioMart/Initializer.pm line 377 BioMart::Initializer::init_clean('BioMart::Initializer=HASH(0xa4a2c68)', 'registryFile', '/home/cropdesign/biomart/biomart-perl/conf/registryURLPointer.xml', 'action', 'cached', 'mode', 'memory') called at /home/cropdesign/biomart/biomart-perl/bin/../lib/BioMart/Initializer.pm line 328 BioMart::Initializer::init_cached('BioMart::Initializer=HASH(0xa4a2c68)', 'registryFile', '/home/cropdesign/biomart/biomart-perl/conf/registryURLPointer.xml', 'action', 'cached', 'mode', 'memory') called at /home/cropdesign/biomart/biomart-perl/bin/../lib/BioMart/Initializer.pm line 168 BioMart::Initializer::_new('BioMart::Initializer=HASH(0xa4a2c68)', 'registryFile', '/home/cropdesign/biomart/biomart-perl/conf/registryURLPointer.xml', 'action', 'cached', 'mode', 'memory') called at /home/cropdesign/biomart/biomart-perl/bin/../lib/BioMart/RootI.pm line 64 BioMart::RootI::new('BioMart::Initializer', 'registryFile', '/home/cropdesign/biomart/biomart-perl/conf/registryURLPointer.xml', 'action', 'cached', 'mode', 'memory') called at /home/cropdesign/biomart/biomart-perl/bin/configureBioMart.pl line 330 eval {...} at /home/cropdesign/biomart/biomart-perl/bin/configureBioMart.pl line 329 Do you have an idea on what could be wrong, I have no errorlog created. Best regards, Bérénice Berenice Wulbrecht Phone: +32 9 242 9172, E-Mail: [email protected] Postal Address: CropDesign N.V., - - CD2, 9052 Gent (Zwijnaarde), Belgium CropDesign N.V. - A BASF Plant Science Company CropDesign N.V. Technologiepark 3 B-9052 Gent Belgium General Telephone: +32-9-241 50 80 Fax: +32-9-241 50 89 Confidentiality notice: The information contained in this e-mail is confidential and may be the subject of legal professional privilege. It is intended for the authorized use of the individual or entity addressed. If the receiver or reader of this message is not the intended recipient, you are hereby notified that any disclosure, copying, distribution or use of the contents of this message is prohibited. If this email is received in error, please accept our apologies, delete all copies from your system, and notify us at [email protected].
