Hello, I am struggling to get the web-interface MartView to display interesting data for an extended vega mart.
The extended vega mart is build from the homo sapiens vega schema with an additional table 'gene_test' that has two columns 'gene_id' and 'annotation'. During the mart building process (with MartBuilder), I can see in the dataset view that the key of the new table is correctly associated with the gene table. I have then created the mart and after updating the meta tables using MartEditor I got an additional choice 'NEW_ATTRIBUTES' besides 'Features', "Sequences' and 'Structures' for constructing queries in MartView and MartExplorer. In MartEditor I then dragged and dropped the 'AttributeGroup: new_attributes' so that it now appears under 'AttributePage: feature_page'. I ran the mart configuration again (perl bin/configure.pl ...) and now I can select 'Annotation 1077' besides other entries (e.g. 'VEGA Gene ID') in the 'Feature' panel. When I use MartExplorer, everything works fine, so that I can query the mart and get results accordingly. However, in MartView I can select the same checkboxes as in MartExplorer, but I get the following output: "Validation Error: Attributes from multiple attribute pages are not allowed". Does anyone know what steps need to be undertaken in order to get the same query results in MartView as I get in MartExplorer? Is it not possible to arbitrarily move AttributeGroups and AttributeCollections around in MartEditor? Thanks, Joachim -- B.1079 Michael Smith Building Faculty of Life Sciences The University of Manchester Oxford Road Manchester M13 9PT United Kingdom
