Dear Joachim, Thanks for sending the XML files, I looked into it and started MartView with it, everything seems fine to me. Could you please let me know which attributes you chose when error occurred? Or even better: after you chose those attributes, you can just click the "XML" button on the top right corner of MartView web interface, then you will get the query in XML format, please send it to me. I would try them here to reproduce the problem.
>From what you described in your first email, it seemed you had run >configure.pl twice, one was before drag-drop the new attribute, and the other >was after that. This leads me thinking you might have conflict GUI templates. >If you were running configure.pl without --clean option, please make sure you >do so, this may help solve the problem. Kind regards, Junjun > -----Original Message----- > From: [email protected] > [mailto:[email protected]] On Behalf Of Junjun Zhang > Sent: Wednesday, April 08, 2009 12:08 PM > To: Joachim Baran; [email protected] > Subject: RE: [mart-dev] Using MartView on vega mart with > additional tables > > Dear Joachim, > > Could you please send me (not the mart-dev list as it filters > out attachments) your configuration files? You can generate > those XML files using MartEditor: File => Save All. You will > find two files (???.xml and ???.template.xml) being saved in > the folder you just chose. Please send me both files. > > Best regards, > Junjun > > > > -----Original Message----- > > From: [email protected] > > [mailto:[email protected]] On Behalf Of Joachim Baran > > Sent: Wednesday, April 08, 2009 11:47 AM > > To: [email protected] > > Subject: [mart-dev] Using MartView on vega mart with > additional tables > > > > Hello, > > > > I am struggling to get the web-interface MartView to display > > interesting data for an extended vega mart. > > > > The extended vega mart is build from the homo sapiens vega > schema with > > an additional table 'gene_test' that has two columns 'gene_id' and > > 'annotation'. During the mart building process (with > MartBuilder), I > > can see in the dataset view that the key of the new table > is correctly > > associated with the gene table. I have then created the > mart and after > > updating the meta tables using MartEditor I got an > additional choice > > 'NEW_ATTRIBUTES' besides 'Features', "Sequences' and > 'Structures' for > > constructing queries in MartView and MartExplorer. In MartEditor I > > then dragged and dropped the > > 'AttributeGroup: new_attributes' so that it now appears under > > 'AttributePage: feature_page'. I ran the mart configuration again > > (perl bin/configure.pl ...) and now I can select 'Annotation 1077' > > besides other entries (e.g. 'VEGA Gene ID') in the 'Feature' panel. > > When I use MartExplorer, everything works fine, so that I can query > > the mart and get results accordingly. However, in MartView I can > > select the same checkboxes as in MartExplorer, but I get > the following > > output: "Validation Error: Attributes from multiple attribute pages > > are not allowed". > > > > Does anyone know what steps need to be undertaken in order > to get the > > same query results in MartView as I get in MartExplorer? Is it not > > possible to arbitrarily move AttributeGroups and > AttributeCollections > > around in MartEditor? > > > > Thanks, > > Joachim > > > > -- > > B.1079 Michael Smith Building > > Faculty of Life Sciences > > The University of Manchester > > Oxford Road > > Manchester > > M13 9PT > > United Kingdom > > >
