Sorry, forget to mention, once you modified martservice.PLS you have to stop apache, rerun configure.pl with --clean option then start apache again.
> -----Original Message----- > From: [email protected] > [mailto:[email protected]] On Behalf Of Junjun Zhang > Sent: Tuesday, October 27, 2009 10:40 AM > To: Joachim Baran; [email protected] > Subject: RE: [mart-dev] HTML output in MartService > > Hi Joachim, > > For your first question, please find the following line in > cgi-bin/martservice.PLS, under 'run_query' function: > > if ($query->header && $query->header eq '1') { > > Then you can add: > > print $CGI->header(); > > right before it. > > For the second question about pop-up message in Ensembl > Genome Browser, please contact Ensembl team at [email protected]. > > Hope this helps, let us know if you have further questions. > > Best regards, > Junjun > > > > -----Original Message----- > > From: [email protected] > > [mailto:[email protected]] On Behalf Of Junjun Zhang > > Sent: Monday, October 26, 2009 6:00 PM > > To: Joachim Baran; [email protected] > > Subject: RE: [mart-dev] HTML output in MartService > > > > Hi Joachim, > > > > We are looking into the problems and will get you back soon. > > > > Thanks for your patience. > > > > Junjun > > > > > > > -----Original Message----- > > > From: [email protected] > > > [mailto:[email protected]] On Behalf Of Joachim Baran > > > Sent: Saturday, October 24, 2009 12:05 PM > > > To: [email protected] > > > Subject: [mart-dev] HTML output in MartService > > > > > > Hello! > > > > > > I am using MartService to output the result of query, but > > instead of > > > TSV I am outputting HTML. > > > > > > The query is > > > http://www.biomart.org/biomart/martservice?query=%3C?xml%20ver > > > sion=%221.0%22%20encoding=%22UTF-8%22?%3E%3C!DOCTYPE%20Query%3 > > > E%3CQuery%20%20virtualSchemaName%20=%20%22default%22%20formatt > > > er%20=%20%22HTML%22%20header%20=%20%221%22%20uniqueRows%20=%20 > > > %220%22%20count%20=%20%22%22%20datasetConfigVersion%20=%20%220 > > > .7%22%20%3E%3CDataset%20name%20=%20%22hsapiens_gene_ensembl%22 > > > %20interface%20=%20%22default%22%20%3E%3CFilter%20name%20=%20% > > > 22chromosome_name%22%20value%20=%20%22Y%22/%3E%3CFilter%20name > > > %20=%20%22ensembl_gene_id%22%20value%20=%20%22ENSG00000234830% > > > 22/%3E%3CAttribute%20name%20=%20%22ensembl_gene_id%22%20/%3E%3 > > > CAttribute%20name%20=%20%22ensembl_transcript_id%22%20/%3E%3C/ > > > Dataset%3E%3C/Query%3E > > > > > > Unfortunately, my browsers (Firefox and Safari) render the > > output as > > > plain text. Is there a tweak to make the browsers interpret > > the result > > > as HTML? > > > > > > On an unrelated note, has someone experience with > > displaying formatted > > > data in the pop-ups in the Ensembl Genome Browser from exported > > > attributes using BioMart's DAS server? For example, when > > clicking on > > > the Ensembl/Havana genes in the region view, I get a pop up > > telling me > > > the gene ID/transcript ID with corresponding link-outs. Is > > it possible > > > to do something like this using BioMart/DAS? > > > > > > BW, > > > Joachim > > > > > > -- > > > B.1079 Michael Smith Building > > > Faculty of Life Sciences > > > The University of Manchester > > > Oxford Road > > > Manchester > > > M13 9PT > > > United Kingdom > > > > > >
