Sorry, forget to mention, once you modified martservice.PLS you have to stop 
apache, rerun configure.pl with --clean option then start apache again.

 

> -----Original Message-----
> From: [email protected] 
> [mailto:[email protected]] On Behalf Of Junjun Zhang
> Sent: Tuesday, October 27, 2009 10:40 AM
> To: Joachim Baran; [email protected]
> Subject: RE: [mart-dev] HTML output in MartService
> 
> Hi Joachim,
> 
> For your first question, please find the following line in 
> cgi-bin/martservice.PLS, under 'run_query' function:
> 
> if ($query->header && $query->header eq '1') {
> 
> Then you can add:
> 
> print $CGI->header();
> 
> right before it.
> 
> For the second question about pop-up message in Ensembl 
> Genome Browser, please contact Ensembl team at [email protected].
> 
> Hope this helps, let us know if you have further questions.
>  
> Best regards,
> Junjun
> 
> 
> > -----Original Message-----
> > From: [email protected]
> > [mailto:[email protected]] On Behalf Of Junjun Zhang
> > Sent: Monday, October 26, 2009 6:00 PM
> > To: Joachim Baran; [email protected]
> > Subject: RE: [mart-dev] HTML output in MartService
> > 
> > Hi Joachim,
> > 
> > We are looking into the problems and will get you back soon.
> > 
> > Thanks for your patience.
> > 
> > Junjun
> >  
> > 
> > > -----Original Message-----
> > > From: [email protected]
> > > [mailto:[email protected]] On Behalf Of Joachim Baran
> > > Sent: Saturday, October 24, 2009 12:05 PM
> > > To: [email protected]
> > > Subject: [mart-dev] HTML output in MartService
> > > 
> > > Hello!
> > > 
> > > I am using MartService to output the result of query, but
> > instead of
> > > TSV I am outputting HTML.
> > > 
> > > The query is
> > > http://www.biomart.org/biomart/martservice?query=%3C?xml%20ver
> > > sion=%221.0%22%20encoding=%22UTF-8%22?%3E%3C!DOCTYPE%20Query%3
> > > E%3CQuery%20%20virtualSchemaName%20=%20%22default%22%20formatt
> > > er%20=%20%22HTML%22%20header%20=%20%221%22%20uniqueRows%20=%20
> > > %220%22%20count%20=%20%22%22%20datasetConfigVersion%20=%20%220
> > > .7%22%20%3E%3CDataset%20name%20=%20%22hsapiens_gene_ensembl%22
> > > %20interface%20=%20%22default%22%20%3E%3CFilter%20name%20=%20%
> > > 22chromosome_name%22%20value%20=%20%22Y%22/%3E%3CFilter%20name
> > > %20=%20%22ensembl_gene_id%22%20value%20=%20%22ENSG00000234830%
> > > 22/%3E%3CAttribute%20name%20=%20%22ensembl_gene_id%22%20/%3E%3
> > > CAttribute%20name%20=%20%22ensembl_transcript_id%22%20/%3E%3C/
> > > Dataset%3E%3C/Query%3E
> > > 
> > > Unfortunately, my browsers (Firefox and Safari) render the
> > output as
> > > plain text. Is there a tweak to make the browsers interpret
> > the result
> > > as HTML?
> > > 
> > > On an unrelated note, has someone experience with
> > displaying formatted
> > > data in the pop-ups in the Ensembl Genome Browser from exported 
> > > attributes using BioMart's DAS server? For example, when
> > clicking on
> > > the Ensembl/Havana genes in the region view, I get a pop up
> > telling me
> > > the gene ID/transcript ID with corresponding link-outs. Is
> > it possible
> > > to do something like this using BioMart/DAS?
> > > 
> > > BW,
> > > Joachim
> > > 
> > > --
> > > B.1079 Michael Smith Building
> > > Faculty of Life Sciences
> > > The University of Manchester
> > > Oxford Road
> > > Manchester
> > > M13 9PT
> > > United Kingdom
> > > 
> > 
> 

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