FYI: a new Phytozome BioMart database. http://www.phytozome.net/biomart/martview.
Now also available through the central portal: http://www.biomart.org/biomart/martview Please see the message below a. Phytozome is a joint project of the Department of Energy's Joint Genome Institute <http://www.jgi.doe.gov> and the Center for Integrative Genomics <http://cigbrowser.berkeley.edu> to facilitate comparative genomic studies amongst green plants. Clusters of orthologous and paralogous genes that represent the modern descendents of ancestral gene sets are constructed at key phylogenetic nodes. These clusters allow easy access to clade specific orthology/paralogy relationships as well as clade specific genes and gene expansions. As of release v5.0, Phytozome provides access to nine sequenced and annotated green plant genomes, eight of which have been clustered into gene families at six evolutionarily significant nodes. Where possible, each gene has been annotated with PFAM, KOG, KEGG, and PANTHER assignments, and publicly available annotations from RefSeq, UniProt, TAIR, JGI are hyper-linked and searchable. thanks, David David M. Goodstein, Ph.D. Plant and Computational Genomics Group Joint Genome Institute - U.S. Dept. of Energy Center for Integrative Genomics - UC Berkeley
