FYI: a new Phytozome BioMart database.

http://www.phytozome.net/biomart/martview.

Now also available through the central portal:

http://www.biomart.org/biomart/martview

Please see the message below

a.


Phytozome is a joint project of the Department of Energy's Joint Genome
Institute <http://www.jgi.doe.gov>  and the Center for Integrative Genomics
<http://cigbrowser.berkeley.edu> to facilitate comparative genomic studies
amongst green plants. Clusters of orthologous and paralogous genes that
represent the modern descendents of ancestral gene sets are constructed at
key phylogenetic nodes. These clusters allow easy access to clade specific
orthology/paralogy relationships as well as clade specific genes and gene
expansions. As of release v5.0, Phytozome provides access to nine sequenced
and annotated green plant genomes, eight of which have been clustered into
gene families at six evolutionarily significant nodes. Where possible, each
gene has been annotated with PFAM, KOG, KEGG, and PANTHER assignments, and
publicly available annotations from RefSeq, UniProt, TAIR, JGI are
hyper-linked and searchable.

thanks,


David 


 
David M. Goodstein, Ph.D.
Plant and Computational Genomics Group
Joint Genome Institute - U.S. Dept. of Energy
Center for Integrative Genomics - UC Berkeley


 

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