Slight correction:: Phytozome now contains 20 annotated plant genomes
clustered into gene families at 15 nodes. Sorry for sending stale
boilerplate!
-David
On Jan 14, 2010, at 8:19 AM, Arek Kasprzyk <[email protected]>
wrote:
FYI: a new Phytozome BioMart database.
http://www.phytozome.net/biomart/martview.
Now also available through the central portal:
http://www.biomart.org/biomart/martview
Please see the message below
a.
Phytozome is a joint project of the Department of Energy's Joint
Genome
Institute <http://www.jgi.doe.gov> and the Center for Integrative
Genomics
<http://cigbrowser.berkeley.edu> to facilitate comparative genomic
studies
amongst green plants. Clusters of orthologous and paralogous genes
that
represent the modern descendents of ancestral gene sets are
constructed at
key phylogenetic nodes. These clusters allow easy access to clade
specific
orthology/paralogy relationships as well as clade specific genes and
gene
expansions. As of release v5.0, Phytozome provides access to nine
sequenced
and annotated green plant genomes, eight of which have been
clustered into
gene families at six evolutionarily significant nodes. Where
possible, each
gene has been annotated with PFAM, KOG, KEGG, and PANTHER
assignments, and
publicly available annotations from RefSeq, UniProt, TAIR, JGI are
hyper-linked and searchable.
thanks,
David
David M. Goodstein, Ph.D.
Plant and Computational Genomics Group
Joint Genome Institute - U.S. Dept. of Energy
Center for Integrative Genomics - UC Berkeley
