On Mon, Nov 16, 2009 at 2:30 PM, John Didion <jdid...@email.unc.edu> wrote:
>
>
> I am trying to generate a figure of some genomic data. Basically, I want to
> show how many times a certain event happens within each one megabase window
> of each chromosome. The X axis is the chromosomal position (unit is
> megabases) and the Y axis is chromosome number (1-19, X, Y, M in mouse). For
> each chromosome, I want a subplot on which I will draw a bar graph. So
> basically, there will be 22 subplots, each with their own axes, and also X
> and Y axes for the entire figure.
>
> I know how to do subplots, I just don't know how to get the overall figure
> axes. Can anyone help?
>
> I will try to sketch out below with some ascii art what I want in case this
> description isn't clear.
>
>
> | ||||||||||| | | |||| |||| |
> 1 |--------------------------------------
> | |||| || ||||||| |||||
> 2 |--------------------------------------
> |
> . |
> ||||| || | | ||| |||| ||
> 19 |--------------------------------------
> | |||||| | ||| | | ||
> X |--------------------------------------
> || ||| |||||
> Y |--------------------------------------
> | || ||||| |||||
> M |--------------------------------------
> |
> --------------------------------------
> 0 50 100 150 200
> Megabases
>
>
> Thanks!
>
>
Spines should do what you are seeking after. Check the example:
http://matplotlib.sourceforge.net/examples/pylab_examples/spine_placement_demo.html#pylab-examples-spine-placement-demo
> --
> John Didion
> Computational Biology, PhD Student
> Fernando Pardo-Manuel de Villena Lab
> UNC Chapel Hill
>
>
>
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--
Gökhan
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