Dear Aaron, Thanks a lot. The Java memory was the problem.
Best, Claudio On 9/23/10 11:57 PM, "Aaron Darling" <aarondarl...@ucdavis.edu> wrote: > Hi Claudio, thanks for writing. > > The ortholog exporter does not have any fixed limit on the number of > genomes that can be processed, but it is limited by the amount of memory > available to java. When you run the ortholog export, do any messages > appear on the console log? These can be seen by selecting "Help->Show > console" in the menu. If so, it would be useful to know what messages > appeared there. If I had to guess, Java may need more memory for the > task you're attempting. The procedure to set higher memory for Java > depends on the OS you're using, so it would be helpful to know that as > well. > > Cheers, > -Aaron > > On Thu, 2010-09-23 at 12:24 +0200, Claudio Donati wrote: >> Dear Mauve users, >> >> I am using Mauve on a dataset of ~50 bacterial genomes. >> The sequences are in Genbank format and contain CDS predictions. I can >> produce an alignment, but when I try to export the orthologs using the >> GUI, Mauve produces an empty file. Any clue of what could be wrong? >> >> Thanks a lot. >> >> Claudio Donati >> -- >> >> Claudio Donati, PhD >> Systems Biology >> Novartis Vaccines & Diagnostics >> Via Fiorentina 1, 53100 Siena-ITALY >> Office: +39 0577 243063 >> Fax: +39 0577 243564 >> e-mail: claudio.don...@novartis.com >> >> ----------------------------------------------------------------------------->> - >> Nokia and AT&T present the 2010 Calling All Innovators-North America contest >> Create new apps & games for the Nokia N8 for consumers in U.S. and Canada >> $10 million total in prizes - $4M cash, 500 devices, nearly $6M in marketing >> Develop with Nokia Qt SDK, Web Runtime, or Java and Publish to Ovi Store >> http://p.sf.net/sfu/nokia-dev2dev >> _______________________________________________ Mauve-users mailing list >> Mauve-users@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/mauve-users > > > > ------------------------------------------------------------------------------ > Nokia and AT&T present the 2010 Calling All Innovators-North America contest > Create new apps & games for the Nokia N8 for consumers in U.S. and Canada > $10 million total in prizes - $4M cash, 500 devices, nearly $6M in marketing > Develop with Nokia Qt SDK, Web Runtime, or Java and Publish to Ovi Store > http://p.sf.net/sfu/nokia-dev2dev > _______________________________________________ > Mauve-users mailing list > Mauve-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/mauve-users -- Claudio Donati, PhD Systems Biology Novartis Vaccines & Diagnostics Via Fiorentina 1, 53100 Siena-ITALY Office: +39 0577 243063 Fax: +39 0577 243564 e-mail: claudio.don...@novartis.com ------------------------------------------------------------------------------ Start uncovering the many advantages of virtual appliances and start using them to simplify application deployment and accelerate your shift to cloud computing. http://p.sf.net/sfu/novell-sfdev2dev _______________________________________________ Mauve-users mailing list Mauve-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mauve-users
