Hi Manal,

Quoting Manal Farid <drmana...@hotmail.com>:

> Hi All- in mauve 2.3.1 , I could not fing a snp output file within the output
> files (backbone, BBCLOS, guide tree) when using progressive mauve?- what
> could be wrong?. thank you- mnal


You need to generate it from the GUI.  Download the GUI version and then open
the XMFA file that was created by progressive Mauve.  Menu options allows you
to export an image of the alignment, the SNPs, etc.

Ray



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