Dear all- I exported SNPs for 2 ref bacterial strains to be >2000 snps however,
it was reported before that snps between those 2 strains are 500 only?- why
this great difference (progressive align. is used)- thanks, Manal
> Date: Wed, 14 May 2014 07:12:08 +0800
> From: r...@cuhk.edu.hk
> To: drmana...@hotmail.com
> CC: mauve-users@lists.sourceforge.net
> Subject: Re: [Mauve-users] SNP output file
>
>
> Hi Manal,
>
>
> Quoting Manal Farid <drmana...@hotmail.com>:
>
> > Hi All- in mauve 2.3.1 , I could not fing a snp output file within the
> > output
> > files (backbone, BBCLOS, guide tree) when using progressive mauve?- what
> > could be wrong?. thank you- mnal
>
>
> You need to generate it from the GUI. Download the GUI version and then open
> the XMFA file that was created by progressive Mauve. Menu options allows you
> to export an image of the alignment, the SNPs, etc.
>
> Ray
>
>
>
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