Dear all,

I am getting a strange error when I use xmfa2maf (downloaded from the 
"All other programs" link).  My original FASTA file has a set of 
sequences.  After they are all loaded (i.e., various "Sequence loaded 
successfully." messages), I get this error:

interval 20 seq 1 left 1033547 right 1038442
l_baseI 1033547 r_baseI 128 l_contigI 0 r_contigI 1 name ...
Error, input alignment must spans multiple contigs/chromosomes. Unable 
to translate to MAF

Has anyone encountered this error before?  Thank you in advance!

Ray

PS:  I had asked an unrelated question back on May 2nd about the format 
of the SNP file.  If someone could help me out with that, that would be 
great!  I'm actually still unsure of the file format...


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