Dear Support Group, I have aligned 78 Enterococcus faecalis genomes, and I am currently trying to construct a phylogenetic tree based on the alignment file in XMFA format. This alignment was done on a computer running Windows 7, and we have problems that occur when we try to manipulate this file (specifically with StripSubsetLCBs) on a different computer running a UNIX environment. StripSubsetLCBs claims that the length of sequence described in the FASTA header is different from the length of sequence that is actually read.
For example, if the following was the input, >seq1:1-10 AGTCGATCGA anything trying to read this file on the other computer would claim that the length of the sequence was actually more than 10, even though actually checking the file shows that the length is indeed correct. Is there any way to fix this issue, or any other way to attain a phylogenetic tree from Mauve outputs? Regards, Karthik Hullahalli ------------------------------------------------------------------------------ Comprehensive Server Monitoring with Site24x7. Monitor 10 servers for $9/Month. Get alerted through email, SMS, voice calls or mobile push notifications. Take corrective actions from your mobile device. http://pubads.g.doubleclick.net/gampad/clk?id=154624111&iu=/4140/ostg.clktrk _______________________________________________ Mauve-users mailing list Mauve-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mauve-users
