Hi!
I'm not sure, but maybe problem is in end-of-line symbol encoding, which is
different in windows and unix-like systems.
Try dos2unix package or check it manually in vim (it will show extra
characters, if they are).
2014-11-15 3:43 GMT+04:00 Hullahalli, Karthik <kxh140...@utdallas.edu>:
> Dear Support Group,
>
> I have aligned 78 Enterococcus faecalis genomes, and I am currently trying
> to construct a phylogenetic tree based on the alignment file in XMFA
> format. This alignment was done on a computer running Windows 7, and we
> have problems that occur when we try to manipulate this file (specifically
> with StripSubsetLCBs) on a different computer running a UNIX environment.
> StripSubsetLCBs claims that the length of sequence described in the FASTA
> header is different from the length of sequence that is actually read.
>
> For example, if the following was the input,
>
> >seq1:1-10
> AGTCGATCGA
>
> anything trying to read this file on the other computer would claim that
> the length of the sequence was actually more than 10, even though actually
> checking the file shows that the length is indeed correct.
>
> Is there any way to fix this issue, or any other way to attain a
> phylogenetic tree from Mauve outputs?
>
> Regards,
> Karthik Hullahalli
>
>
> ------------------------------------------------------------------------------
> Comprehensive Server Monitoring with Site24x7.
> Monitor 10 servers for $9/Month.
> Get alerted through email, SMS, voice calls or mobile push notifications.
> Take corrective actions from your mobile device.
>
> http://pubads.g.doubleclick.net/gampad/clk?id=154624111&iu=/4140/ostg.clktrk
> _______________________________________________
> Mauve-users mailing list
> Mauve-users@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/mauve-users
>
--
C уважением, Калинина Настя.
------------------------------------------------------------------------------
Comprehensive Server Monitoring with Site24x7.
Monitor 10 servers for $9/Month.
Get alerted through email, SMS, voice calls or mobile push notifications.
Take corrective actions from your mobile device.
http://pubads.g.doubleclick.net/gampad/clk?id=154624111&iu=/4140/ostg.clktrk
_______________________________________________
Mauve-users mailing list
Mauve-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/mauve-users
