Hi, I am trying to align the core genes (~1000 genes) of 41 small bacterial genomes. However, depending on the input order I am getting a lot of scoring error messages or no errors. Unfortunately I didn't find an input order for all 41 genomes which produces no errors. In addition I found two sequence files where even progressiveMauve --output=outfile seq1.faa seq2.faa produces scoring errors while progressiveMauve --output=outfile seq2.faa seq1.faa does not.
I am using version 2.4.0 on Linux. In version 2.3.1 no scoring errors show up, but progressiveMauve gets caught in an endless loop for the same input orders. What does scoring error mean? Is there any way to predict which order of sequences will produce scoring errors and which doesn't? Or even better is there a way to modify the input data to prevent the scoring error at all? Greetings, Franz Baumdicker ------- Dr. Franz Baumdicker Math. Institut Eckerstr 1 79106 Freiburg ------------------------------------------------------------------------------ Dive into the World of Parallel Programming. The Go Parallel Website, sponsored by Intel and developed in partnership with Slashdot Media, is your hub for all things parallel software development, from weekly thought leadership blogs to news, videos, case studies, tutorials and more. Take a look and join the conversation now. http://goparallel.sourceforge.net/ _______________________________________________ Mauve-users mailing list Mauve-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mauve-users
