Hi David, intermingled with the normal output are some error messages indicating Mauve isn't able to write to the output location you've specified:
"Unable to open output file "test6" for writing." I would suggest that you try the same alignment again, but take care to use the output file chooser (the button with ... in the GUI) to select a location to which you have write access. The desktop or your documents folder are some candidates. Best, -Aaron On Fri, 2015-02-13 at 08:54 +1100, David Boyd wrote: > I first downloaded Mauve 2.4 in mid-Dec. and it worked fine (Windows 7 > Pro, 64 bit). Didn't try to use it again until a few weeks ago and > just will not work. Tried some a couple of gbk and a couple of fas > files. I can look at old alignments on 2.4.0 that were done in 2.3.1. > > Running alignment. > Executing > win64\progressiveMauve > --output=test6 > --output-guide-tree=test6.guide_tree > --backbone-output=test6.backbone > L:\Nosocomial\DAB\PlasmidSequencing\IncACplasmids\pAM04528.gbk > L:\Nosocomial\DAB\PlasmidSequencing\IncACplasmids\pAR17.gbk > Storing raw sequence at C:\Users\dboyd\AppData\Local\Temp\rawD672.tmp > Sequence loaded successfully. > L:\Nosocomial\DAB\PlasmidSequencing\IncACplasmids\pAM04528.gbk 158213 > base pairs. > Storing raw sequence at C:\Users\dboyd\AppData\Local\Temp\rawD683.tmp > Sequence loaded successfully.Unable to open output file "test6" for > writing. > > L:\Nosocomial\DAB\PlasmidSequencing\IncACplasmids\pAR17.gbk 143963 > base pairs.Check that you have permission to write files in this > location and that the disk has free space. > > Using weight 13 mers for initial seeds > > This application has requested the Runtime to terminate it in an > unusual way.Creating sorted mer list > > Please contact the application's support team for more > information.Create time was: 0 seconds. > > Creating sorted mer list > Create time was: 0 seconds. > Exited with error code: 3 > > During the time I wasn't using it I think I updated Java but that was > about it. The same files worked on another computer running XP and > Mauve 2.3.1. > > At a lose and NOT computer savvy. > > Dave Boyd > -- Aaron E. Darling, Ph.D. Associate Professor, ithree institute University of Technology Sydney Australia http://darlinglab.org twitter: @koadman UTS CRICOS Provider Code: 00099F DISCLAIMER: This email message and any accompanying attachments may contain confidential information. If you are not the intended recipient, do not read, use, disseminate, distribute or copy this message or attachments. If you have received this message in error, please notify the sender immediately and delete this message. Any views expressed in this message are those of the individual sender, except where the sender expressly, and with authority, states them to be the views of the University of Technology Sydney. Before opening any attachments, please check them for viruses and defects. Think. Green. Do. Please consider the environment before printing this email. ------------------------------------------------------------------------------ Dive into the World of Parallel Programming. The Go Parallel Website, sponsored by Intel and developed in partnership with Slashdot Media, is your hub for all things parallel software development, from weekly thought leadership blogs to news, videos, case studies, tutorials and more. Take a look and join the conversation now. http://goparallel.sourceforge.net/ _______________________________________________ Mauve-users mailing list Mauve-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mauve-users
