I too have received numerous "-1073741819" errors in Mauve 2.4. I just
hadn't gotten around to reporting it yet.
However, running the same analyses in Mauve 2.3.1 didn't give me the same
error. So even though it doesn't fix the problem in 2.4, that might be one
way to bypass the issue.
Cheers,
Marco
Marco A. Riojas
Lead Biologist, Collections/R&D
Biodefense & Emerging Infections
American Type Culture Collection (ATCC)
On Fri, Feb 13, 2015 at 2:32 PM, NML_ARNI <nml_a...@phac-aspc.gc.ca> wrote:
> Thanks for the reply Aaron...I actually have admin privileges and checked
> my permissions and have read/write....nonetheless I tried an alignment and
> pointed the saved output to the desktop (test).....it looked like it went
> farther but only an empty 'test' file ended up on the desktop:
> Running alignment.
> Executing
> win64\progressiveMauve
> --output=C:\Users\dboyd\Desktop\test
> --output-guide-tree=C:\Users\dboyd\Desktop\test.guide_tree
> --backbone-output=C:\Users\dboyd\Desktop\test.backbone
> L:\Nosocomial\DAB\PlasmidSequencing\IncACplasmids\pAM04528.gbk
> L:\Nosocomial\DAB\PlasmidSequencing\IncACplasmids\pAR17.gbk
> Storing raw sequence at C:\Users\dboyd\AppData\Local\Temp\rawEAEC.tmp
> Sequence loaded successfully.
> L:\Nosocomial\DAB\PlasmidSequencing\IncACplasmids\pAM04528.gbk 158213 base
> pairs.
> Storing raw sequence at C:\Users\dboyd\AppData\Local\Temp\rawEB3B.tmp
> Sequence loaded successfully.
> L:\Nosocomial\DAB\PlasmidSequencing\IncACplasmids\pAR17.gbk 143963 base
> pairs.
> Using weight 13 mers for initial seeds
> Creating sorted mer list
> Create time was: 0 seconds.
> Creating sorted mer list
> Create time was: 1 seconds.
> 3%..6%..9%..13%..
> 16%..19%..23%..
> 26%..29%..33%..
> 36%..39%..43%..
> 46%..49%..52%..
> 56%..59%..62%..
> 66%..69%..72%..
> 76%..79%..82%..
> 86%..89%..92%..
> 95%..97%..99%..done.
> using default bp penalty: 120435
> using default bp estimate min score: 361306
> Starting with 1332 multi-matches
> Computing genome content distance matrix...
>
>
> Genome conservation distance matrix:
> 0 0.394941
> 0.394941 0
>
> Writing guide tree to C:\Users\dboyd\Desktop\test.guide_tree
> Exited with error code: -1073741819
>
> Dave
>
>
> *******************************************************************************************************************
> Hi David, intermingled with the normal output are some error messages
> indicating Mauve isn't able to write to the output location you've
> specified:
>
> "Unable to open output file "test6" for writing."
>
> I would suggest that you try the same alignment again, but take care to
> use the output file chooser (the button with ... in the GUI) to select a
> location to which you have write access. The desktop or your documents
> folder are some candidates.
>
> Best,
> -Aaron
>
>
> On Fri, 2015-02-13 at 08:54 +1100, David Boyd wrote:
> > I first downloaded Mauve 2.4 in mid-Dec. and it worked fine (Windows 7
> > Pro, 64 bit). Didn't try to use it again until a few weeks ago and
> > just will not work. Tried some a couple of gbk and a couple of fas
> > files. I can look at old alignments on 2.4.0 that were done in 2.3.1.
> >
> > Running alignment.
> > Executing
> > win64\progressiveMauve
> > --output=test6
> > --output-guide-tree=test6.guide_tree
> > --backbone-output=test6.backbone
> > L:\Nosocomial\DAB\PlasmidSequencing\IncACplasmids\pAM04528.gbk
> > L:\Nosocomial\DAB\PlasmidSequencing\IncACplasmids\pAR17.gbk
> > Storing raw sequence at C:\Users\dboyd\AppData\Local\Temp\rawD672.tmp
> > Sequence loaded successfully.
> > L:\Nosocomial\DAB\PlasmidSequencing\IncACplasmids\pAM04528.gbk 158213
> > base pairs.
> > Storing raw sequence at C:\Users\dboyd\AppData\Local\Temp\rawD683.tmp
> > Sequence loaded successfully.Unable to open output file "test6" for
> > writing.
> >
> > L:\Nosocomial\DAB\PlasmidSequencing\IncACplasmids\pAR17.gbk 143963
> > base pairs.Check that you have permission to write files in this
> > location and that the disk has free space.
> >
> > Using weight 13 mers for initial seeds
> >
> > This application has requested the Runtime to terminate it in an
> > unusual way.Creating sorted mer list
> >
> > Please contact the application's support team for more
> > information.Create time was: 0 seconds.
> >
> > Creating sorted mer list
> > Create time was: 0 seconds.
> > Exited with error code: 3
> >
> > During the time I wasn't using it I think I updated Java but that was
> > about it. The same files worked on another computer running XP and
> > Mauve 2.3.1.
> >
> > At a lose and NOT computer savvy.
> >
> > Dave Boyd
> >
>
>
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leadership blogs to news, videos, case studies, tutorials and more. Take a
look and join the conversation now. http://goparallel.sourceforge.net/
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