Dear Aaron, "Clear alignment cache" did not solve the problem. Additionally I experiencing the same "annotations not loaded" with not only one of the alignments I did months ago. I just was able to work with them by repeating the progressive alignment, but as my personal computer is not very performant, the last time took me almost 24h, and the computer get really really slow while I'm computing the alignments. Is there any other way to avoid realigning the sequences again?
Thank you!! Cristina ----- Original Message ----- > From: Aaron Darling <aaron.darl...@uts.edu.au> > To: mauve-users@lists.sourceforge.net > Date: 2015-03-13 11:36:23 > Subject: Re: [Mauve-users] annotations not loaded > > Hi Cristina, > There seems to be a problem with the way the Mauve GUI tries to cache > some of the sequence data the first time the alignment is opened, to > speed up the load time when it is opened in the future. Others are > experiencing this too. > > One workaround you could try is, before opening the alignment, go to the > help menu and select "Clear alignment cache...". This seems to have > worked for at least one other person, hopefully it will work for you too > until a bugfix can be put in the next release. > > Best, > -Aaron > > On Fri, 2015-03-13 at 13:17 +1100, cav00004 wrote: > > Dear Aaron, > > I made an alignment of 15 bacterial strains months ago and had no problem > > until now. > > I reopened it yesterday... and try again today a few times, and the found > > the problem that annotations are not loaded, so alignment is basically > > useless for my purposes. > > It's happened to me few times in the past. > > Please, any idea how to fix it?? > > > > Thank you very much! > > > > Cristina > > > > > > ------------------------ > > Cristina Andres-Barrao, PhD. > > cav00...@nodai.ac.jp > > Laboratory of Fermentation Biochemistry > > Department of Fermentation Sciences > > Faculty of Applied Biosciences > > Tokyo University of Agriculture > > 1-1-1 Sakuragaoka, Setagaya-ku > > Tokyo 156-8502, Japan > > > > > > ------------------------ > > Cristina Andres-Barrao, PhD. > > cav00...@nodai.ac.jp > > Laboratory of Fermentation Biochemistry > > Department of Fermentation Sciences > > Faculty of Applied Biosciences > > Tokyo University of Agriculture > > 1-1-1 Sakuragaoka, Setagaya-ku > > Tokyo 156-8502, Japan > > > > ------------------------------------------------------------------------------ > > Dive into the World of Parallel Programming The Go Parallel Website, > > sponsored > > by Intel and developed in partnership with Slashdot Media, is your hub for > > all > > things parallel software development, from weekly thought leadership blogs > > to > > news, videos, case studies, tutorials and more. Take a look and join the > > conversation now. http://goparallel.sourceforge.net/ > > _______________________________________________ > > Mauve-users mailing list > > Mauve-users@lists.sourceforge.net > > https://lists.sourceforge.net/lists/listinfo/mauve-users > > -- > Aaron E. Darling, Ph.D. > Associate Professor, ithree institute > University of Technology Sydney > Australia > > http://darlinglab.org > twitter: @koadman > > > > > > UTS CRICOS Provider Code: 00099F > DISCLAIMER: This email message and any accompanying attachments may contain > confidential information. > If you are not the intended recipient, do not read, use, disseminate, > distribute or copy this message or > attachments. If you have received this message in error, please notify the > sender immediately and delete > this message. Any views expressed in this message are those of the individual > sender, except where the > sender expressly, and with authority, states them to be the views of the > University of Technology Sydney. > Before opening any attachments, please check them for viruses and defects. > > Think. Green. Do. > > Please consider the environment before printing this email. > ------------------------------------------------------------------------------ > Dive into the World of Parallel Programming The Go Parallel Website, sponsored > by Intel and developed in partnership with Slashdot Media, is your hub for all > things parallel software development, from weekly thought leadership blogs to > news, videos, case studies, tutorials and more. Take a look and join the > conversation now. http://goparallel.sourceforge.net/ > _______________________________________________ > Mauve-users mailing list > Mauve-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/mauve-users > ------------------------ Cristina Andres-Barrao, PhD. cav00...@nodai.ac.jp Laboratory of Fermentation Biochemistry Department of Fermentation Sciences Faculty of Applied Biosciences Tokyo University of Agriculture 1-1-1 Sakuragaoka, Setagaya-ku Tokyo 156-8502, Japan ------------------------------------------------------------------------------ Dive into the World of Parallel Programming The Go Parallel Website, sponsored by Intel and developed in partnership with Slashdot Media, is your hub for all things parallel software development, from weekly thought leadership blogs to news, videos, case studies, tutorials and more. Take a look and join the conversation now. http://goparallel.sourceforge.net/ _______________________________________________ Mauve-users mailing list Mauve-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mauve-users
