Dear All,
I am new to Mauve, so please bear with me for the naive questions. I am running Progressive Mauve on Win8.1. After aligning whole genomes, I would like to use the resulting files for phylogenetic analyses. I am interested in the snapshots xmfa2maf and stripsubsetLCB. I am not sure I have a clear idea of what they do, how to use them or which folder they should be placed in order to work. Can they be called from the GUI or are they command line only? I failed to find a manual regarding the snapshots, is there a link to it? Thanks, Max Massimiliano S. Tagliamonte Graduate Student University of Florida College of Veterinary Medicine Department of Infectious Diseases and Pathology
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