Dear All,

I am new to Mauve, so please bear with me for the naive questions. I am running 
Progressive Mauve on Win8.1. After aligning whole genomes, I would like to use 
the resulting files for phylogenetic analyses. I am interested in the snapshots 
xmfa2maf and stripsubsetLCB. I am not sure I have a clear idea of what they do, 
how to use them or which folder they should be placed in order to work. Can 
they be called from the GUI or are they command line only?   I failed to find a 
manual regarding the snapshots, is there a link to it?


Thanks,

Max


Massimiliano S. Tagliamonte
Graduate Student
University of Florida
College of Veterinary Medicine
Department of Infectious Diseases and Pathology
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