On Apr 14, 2014, at 6:19 AM, prem prakash singh <prem0prak...@gmail.com> wrote:
> The fixed Si waveguide (both end) is of 10 um and suspended Si waveguide is 
> of 50 um. The device thickness is  of .26 um and substrate thickness is 2 um. 
> I did 2D MEEP modeling. 
> For transmission flux, I took above structure and then collected flux at the 
> end of suspended waveguide(before gap).  
> For incident flux, I took a continuous waveguide instead of gap. Then 
> collected incident flux at the same point as transmission flux.
> For both flux, Structure (till collection point) and collection point is same 
> , structure is same. But both flux spectrum is different. 

If you put a flux plane right before a gap or other obstruction, the result 
will include both the incident flux and some scattered/reflected flux.  That is 
why your calculations are different.

This is why we tend to recommend using a separate simulation (with no 
scatterer) for normalization purposes, to get the incident flux, as in the Meep 
tutorial.
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