Brutal... I figured out the problem. I assumed that the default u-boot environment with my config fragment changes would be packaged in 'u-boot.bin'. So while debugging this issue I only swapped u-boot.bin on my SD card. I just now thought, "Hmm maybe its in boot.bin???". So I replaced my boot.bin on the SD card and the default environment reflects my changes. I was confused because in petalinux I always package u-boot into the boot.bin. But with meta-xilinx, u-boot.bin is loaded separately with the default environment for u-boot packaged with boot.bin. I learned many things about u-boot, but sadly this was largely chasing red herrings.
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