A checklist of things to do (including some already mentioned):

* Use "top" to check for CPU usage and watch iowait time.  iowait will
show up as a percentage.

* Use "top" and "free" to make sure you are not using swap.

* Use "iotop" to check active disk users.

* Figure out how to use "dstat" to have an updating readout of the
above mentioned stats

* Ensure that your partitions are not more than 75% full as it
encourages filesystem fragmentation

* If you have a small filesystem (say less than 100GB) and are
regularly creating, destroying and copying around large 1GB+ files and
using tools like BitTorrent your filesystem will suffer from
fragmentation

* Check the output of dmesg for IDE/SCSI related errors.

* Use a S.M.A.R.T disk monitoring tool to check for overheating or
failing drives.  If your hard drive is running out of of reallocatable
sectors it will become very slow.

* Advanced thought: Did you switch from ext3 to ext4 as part of the
upgrade?  If so are you using any fsync() heavy apps?

The structure of partitioning shouldn't make a difference.  In fact
having everything in one giant partition helps prevent filesystem
fragmentation in some cases.

-- 
Bruce A. Locke
[email protected]
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