Hi,
I tried to integrate a TIFF series reader in the
mitkDataTreeNodeFactory.cpp in MITK. For reading I use the
itk::ImageSeriesReader and generate a mitk image with the functions
InitializeByItk and SetVolume. However, this results in a volume that
does not contain the whole e.g. 100 TIFF images. Instead the volume
consists of 100 slices of just the first TIFF image.
I don't know exactly if this problem is MITK related, but the file names
are correct and the itk series reader seems to produce a proper volume.
Below, I have attached the source snippet of the series reader in the
mitkDataTreeNodeFactory.cpp.
Thanks a lot for any help,
Marius
typedef unsigned char PixelType;
const unsigned int Dimension = 3;
typedef itk::Image< PixelType, Dimension > ImageType;
typedef itk::ImageSeriesReader< ImageType > ReaderType;
ReaderType::Pointer reader = ReaderType::New();
reader->SetImageIO( itk::TIFFImageIO::New() );
this->GenerateFileList();
reader->SetFileNames( m_MatchedFileNames );
try
{
reader->Update();
mitk::Image::Pointer image = mitk::Image::New();
image->InitializeByItk( reader->GetOutput() );
image->SetVolume( reader->GetOutput()->GetBufferPointer() );
mitk::DataTreeNode::Pointer node = this->GetOutput();
node->SetData( image );
}
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