Hi,
as it turned out, it is not a problem of MITK, but of the itkTIFFImageIO
class of itk.
... and sorry for the duplicates. It wasn't my purpose to post it more
than once ;)
regards,
Marius
Marius Erdt wrote:
> Hi,
>
> I tried to integrate a TIFF series reader in the
> mitkDataTreeNodeFactory.cpp in MITK. For reading I use the
> itk::ImageSeriesReader and generate a mitk image with the functions
> InitializeByItk and SetVolume. However, this results in a volume that
> does not contain the whole e.g. 100 TIFF images. Instead the volume
> consists of 100 slices of just the first TIFF image.
>
> I don't know exactly if this problem is MITK related, but the file names
> are correct and the itk series reader seems to produce a proper volume.
>
> Below, I have attached the source snippet of the series reader in the
> mitkDataTreeNodeFactory.cpp.
>
> Thanks a lot for any help,
>
> Marius
>
>
> typedef unsigned char PixelType;
> const unsigned int Dimension = 3;
>
> typedef itk::Image< PixelType, Dimension > ImageType;
> typedef itk::ImageSeriesReader< ImageType > ReaderType;
>
> ReaderType::Pointer reader = ReaderType::New();
>
> reader->SetImageIO( itk::TIFFImageIO::New() );
>
> this->GenerateFileList();
>
> reader->SetFileNames( m_MatchedFileNames );
>
> try
> {
> reader->Update();
>
> mitk::Image::Pointer image = mitk::Image::New();
> image->InitializeByItk( reader->GetOutput() );
> image->SetVolume( reader->GetOutput()->GetBufferPointer() );
>
> mitk::DataTreeNode::Pointer node = this->GetOutput();
> node->SetData( image );
> }
>
>
>
>
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