Dear Amir,
by the way, I am not yet a Dr. and my first name is Ingmar.
1. How did you save the project? Via File->Safe Project?
I am afraid, that a bug (#1165), that was assigned in the beginning of this
year has not been fixed yet. It includes a larger code change and thus was
handled with care. But it has not yet been fixed.
Thus saving the project via this menu entry might no longer work.
If you would use the DataManager Functionality, which is a different module
like the “Interactive Segmentation” one, than you could save each entry as you
like. But this would include compiling the MITK Mainapp. Are you familiar with
software engeenering? Then please take a closer look at
http://docs.mitk.org/0.8/BuildInstructionsPage.html which is listed on
http://docs.mitk.org/0.8/pages.html. This is currently version 0.8 but 1.0 was
recently released. The documentation still needs to be generated and then we
will link it on http://www.mitk.org/wiki/Documentation.
A Watershed algorithm is not yet added as tool. Maybe someone has implemented
it and can share a binary?
Amir, using MITK and connect an implementation by ITK would be easy once you
know MITK programming.
2. The direct link onto the movie is
http://www.mitk.org/wiki/Interactive_segmentation?action=AttachFile&do=get&target=slicebasedsegmentation.mpeg
You should be able to download the file. Afterwards, if it doesn’t play with
vlc (movie player, that plays almost everything;
http://www.videolan.org/vlc/download-windows.html ) then check your video
settings.
Regards,
Ingmar
Von: amir [mailto:[EMAIL PROTECTED]
Gesendet: Sonntag, 23. November 2008 17:18
An: Wegner Ingmar
Betreff: ITK Download & Ussage
Hello Dear Dr.Wegner Ingmar:
Dear Dr. Wegner Ingmar, Thanks For your Reply, and I am working with this
software for 2 days, but I have 2 main
problems if you answer me Please:
I imported the image slices into the MITK, as you saide with *.*, but after
saving the project and starting to open the
program again, I couldn't find the saved project, can't it save, or I am not
expert in it.(1.bmp - Attached).
I Want to Sgment the Sagittal plane Slices, Between the Femural Cartilage,
Tibial Cartilage & Meniscus, But I can't find
any Button for starting the Segmentation, Can you say me the sequence of the
Segmentation and Activating the
Commands, like Segmentation, Region Growing and Volume Rendering Besides the
Funcionalities, Besides You
know, The MRI Segmentation should do with Watereshed Algorithm that I only saw
the Threshold Algorithm Hear, That
is not Propper Algorithm for MRI Segmentataion. I think all of them are not
activated , or may be I didn't installed the ITK
& VTK (Cmake), that if you adressed me I download them.
Unfortunately the " Short Video Demonstration" (2.bmp - Attached) can not
loaded, I tried 3 times but it was not loaded,
if it is possible, Please Direct Me, Please.
Best Regards.
Amir Hossein Saveh.
Dear Amir,
please always write to the users-list to help others who have similar
questions.
I do not really understand your last Mail.
You were unpatiently waiting for our answer. We are sorry for the
delay, but we all try to do what is possible. I was out of office in fact.
You need a help-file of the software? Since MITK rather is a framework
for medical image analysis, interaction and even image guided therapy, we focus
onto documentation of classes but will extend documentation of the
functionalities in the future. Bugs for this are already assigned.
The application, that you are currently using is rather an example of
how to use these classes than an application with user-support and an extensive
help-file (but this will come).
Have you seen the description on
http://www.mitk.org/wiki/Interactive_segmentation and also the video?
Best Regards,
Ingmar
Von: amir [mailto:[EMAIL PROTECTED]
Gesendet: Freitag, 21. November 2008 14:12
An: Wegner Ingmar
Betreff: AW: ITK Download
Hello Dear Dr.Wegner Ingmar:
I was unpatiently Waiting for your reply, from 2 days ago.Dear Dr.
Ingmar, I have some important questions About the
MITK Ussage, that I ask you as soon as possible, but I appreciate if
you answer me as soon as possible, Please or
introduce me any Help File of this Software.
Best Regards.
Amir Hossein Saveh.
Hi Amir,
if you want to program with MITK, you will need ITK and VTK
(and CMake).
If you want to test a module of the MITK code (like Interactive
Segmentation), then you can download the installer only, as you obviously
already did.
To load / import a DICOM data series, you have to click on
“File” and then select “Open Sequence” and navigate to the folder with the
Dicom images.
If they are not shown, type *.* into the textbox for the name
of the data and hit return. Then all files will be shown. Select the first
Dicom image and then click “OK”.
If you need further help, please explain in more detail what
you want to do. Software development or a simple test of the application…
Besides the Interactive Segmentation Application there are many
other modules (Functionalities) that might be of interest.
Best Regards,
Ingmar
Von: amir [mailto:[EMAIL PROTECTED]
Gesendet: Samstag, 15. November 2008 11:39
An: [EMAIL PROTECTED]
Betreff: ITK Download
Hello:
I downloaded the "Insight Toolkit-3.10.0" zip.version, but
after extract that. I could'nt able to find any exe file
between the extracted files,like the attached file-1,then I
Downloaded the "Interactive Segmentation-Win32"
File, that after opening has theFeature like the attached
file-2,then I have 3 Main Questions:
1- Am I right in Downloading the ITK? Or Not?and If not, Please
Direct Me To Download it (The Download
Path ) Completely,Please.
2- I opend the "Interactive Segmentation -Win32" program, and I
tried to import the MR Images from CD,
in DICOM, but it didn't get the DICOM images, Why?
3- I want to use this software to segment the 62 MRI DICOM
Images, in Soft Tissues involved (a)Femural
cartilage,(b) Tibial Cartilage and, (c) Meniscus ,as Accurate
as Possible,and I know The best algorithm for
this Aim is The Wtereshed Algorithm, But I don't Know Is This
Software can Help Me in This Accurate
Segmentation Or Not, and How Much The ITK has Accuracy in this
Segmentation?
Dear Please Reply Me As Soon As Possible.
Best Regards.
Amir Hossein Saveh.
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