Hi everyone,
I'm just having a bit of trouble with the "make install" task of my external
project.
If anyone can help, I would be extremely grateful.
So, when the "make install" task is run, there is a call to a custom
fixup_bundle method, which eventually fails to verify the app.
-- Analyzing
app='/scratch0/NOT_BACKED_UP/clarkson/install/ucltk-2.5.0/bin/NiftyView2'
-- bundle='/scratch0/NOT_BACKED_UP/clarkson/install/ucltk-2.5.0/bin'
--
executable='/scratch0/NOT_BACKED_UP/clarkson/install/ucltk-2.5.0/bin/NiftyView2'
-- valid='1'
-- executable file 1:
/scratch0/NOT_BACKED_UP/clarkson/install/ucltk-2.5.0/bin/NiftyView2
ldd: warning: you do not have execution permission for
`/scratch0/NOT_BACKED_UP/clarkson/install/ucltk-2.5.0/bin/plugins/liborg_blueberry_osgi.so'
-- verified='0'
-- info='external prerequisites found:
f='/scratch0/NOT_BACKED_UP/clarkson/install/ucltk-2.5.0/bin/NiftyView2'
external_prereqs='/scratch0/NOT_BACKED_UP/clarkson/build/UCLToolkit-SuperBuildRelease/MITK-build/MITK-build/bin/plugins/liborg_blueberry_osgi.so'
apart from all the warnings about not having execute permission on all MITK
libraries (which I think that has been mentioned previously on the mitk-users
list as something we can ignore), it seems that one of my .so files has a
dependency on liborg_blueberry_osgi.so in the MITK-build/MITK-build/plugins
folder.
When the install task runs, all the .so files get copied into the bin or
bin/plugins directory:
/scratch0/NOT_BACKED_UP/clarkson/install/ucltk-2.5.0/bin/plugins/
So when fixup_bundle runs it is trying to validate the installed bundle, so for
the purpose of this explanation, if we focus on the liborg_blueberry_osgi.so
library,
globbed_plugins =
/scratch0/NOT_BACKED_UP/clarkson/install/ucltk-2.5.0/bin/plugins/liborg_blueberry_osgi.so
fixup_bundle
app='/scratch0/NOT_BACKED_UP/clarkson/install/ucltk-2.5.0/bin/NiftyView2'
--
libs='/scratch0/NOT_BACKED_UP/clarkson/install/ucltk-2.5.0/bin/plugins/liborg_blueberry_osgi.so
--
dirs='/scratch0/NOT_BACKED_UP/clarkson/build/UCLToolkit-SuperBuildRelease/VTK-build/bin/;/scratch0/NOT_BACKED_UP/clarkson/build/UCLToolkit-SuperBuildRelease/ITK-build/bin/;/cs/research/medic/common2/paramedic/share/cmic/UCLToolkit/qt-4.7.2/lib;/cs/research/medic/common2/paramedic/share/cmic/UCLToolkit/qt-4.7.2/lib/../bin;/scratch0/NOT_BACKED_UP/clarkson/build/UCLToolkit-SuperBuildRelease/MITK-build/MITK-build/bin/;/scratch0/NOT_BACKED_UP/clarkson/build/UCLToolkit-SuperBuildRelease/UCLToolkit-build/bin/;/scratch0/NOT_BACKED_UP/clarkson/build/UCLToolkit-SuperBuildRelease/CMakeExternals/Install/BOOST/lib/boost-1.46.1/;/scratch0/NOT_BACKED_UP/clarkson/build/UCLToolkit-SuperBuildRelease/GDCM-build/bin/;/scratch0/NOT_BACKED_UP/clarkson/build/UCLToolkit-SuperBuildRelease/CTK-build/CTK-build/bin/;/scratch0/NOT_BACKED_UP/clarkson/install/ucltk-2.5.0/bin/plugins'
-- fixup_bundle: preparing...
As the fixup process progresses, we see
-- 104/402: copying
'/scratch0/NOT_BACKED_UP/clarkson/install/ucltk-2.5.0/bin/plugins/liborg_blueberry_osgi.so'
-- warning: resolved_item == resolved_embedded_item - not copying...
(i.e. it's already in place, so don't bother copying it, which is what I would
expect)
-- 305/402: fix-up not required on this platform
'/scratch0/NOT_BACKED_UP/clarkson/install/ucltk-2.5.0/bin/plugins/liborg_blueberry_osgi.so'
(also what I would expect).
So, when it tries to validate all the installed plugins, the fixup_bundle only
has the MITK-build/bin folder and not the MITK-build/MITK-build/bin/plugins.
Is this a problem? Or should the fixup_bundle be looking in my
/clarkson/install/ucltk-2.5.0/bin/plugins/ where the library actually is?
On a possibly related note: Is this relevant in the external project template:
mark_as_advanced(${MY_PROJECT_NAME}_INSTALL_RPATH_RELATIVE
${MY_PROJECT_NAME}_BUILD_ALL_PLUGINS
)
as I don't have it in my external project.
Many thanks in advance.
Matt
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