Hi Sascha,
I did those and still got some errors like this (each one of them regarding
the same problem of Boost):
---------------------------------------------------------------
CMake Error at C:/Program Files/CMake
2.8/share/cmake-2.8/Modules/FindBoost.cmake:1135 (message):
Unable to find the requested Boost libraries.
Unable to find the Boost header files. Please set BOOST_ROOT to the root
directory containing Boost or BOOST_INCLUDEDIR to the directory containing
Boost's headers.
CMake Error: The following variables are used in this project, but they are
set to NOTFOUND.
Please set them or make sure they are set and tested correctly in the CMake
files:
Boost_INCLUDE_DIR (ADVANCED)
used as include directory in directory
D:/MITK-root/MITK/Modules/DiffusionImaging
used as include directory in directory
D:/MITK-root/MITK/Modules/DiffusionImaging/Testing
used as include directory in directory
D:/MITK-root/MITK/Modules/Bundles/org.mitk.diffusionimaging
used as include directory in directory
D:/MITK-root/MITK/Modules/Bundles/org.mitk.gui.qt.diffusionimaging
---------------------------------------------------------
Here is what I did exactly:
=====================
1. in cmake toggle on:
- MITK_USE_Boost, MITK_USE_Boost_LIBRARIES etc ...
2. after the build process rebuild separately Boost
3. in cmake change the build directory to: A/MITK-superbuild/MITK-build and
toggle on:
- org.mitk.gui.qt.diffusionimagingapp,
org.mitk.gui.qt.diffusionimaging, org.mitk.diffusionimaging,
MITK_USE_Boost_LIBRARIES etc...
4. those errors return from the configuration process in cmake
What have I missed?
Best,
Miri
On Tue, Feb 7, 2012 at 2:23 PM, Sascha Zelzer
<[email protected]>wrote:
> Hi Miri,
>
> Thanks for the buildlog. Are you sure you enabled the MITK_USE_Boost
> option in the CMake GUI? The build directory in the GUI should point to:
>
> C:/MITK-root/MITK-superbuild
>
>
> If you are still getting the same error, you can try to open the
>
> C:/MITK-root/MITK-superbuild/MITK-superbuild.sln
>
> Visual Studio solution and right-click on the "Boost" project and click on
> "Rebuild".
>
> Hope this helps,
>
> Sascha
>
>
> On 02/07/2012 10:45 AM, Miri Trope wrote:
>
> Hi Iggy,
>
> Thank you for your helpful information, you've motivated me to use
> diffusionImaging :-)
> I'm trying to build again MITK with BOOST toggle on, but I'm dealing with
> some building errors:
>
> CMake Error at C:/Program Files (x86)/CMake
> 2.8/share/cmake-2.8/Modules/FindBoost.cmake:1135 (message):
> 10> Unable to find the requested Boost libraries.
> 10> Unable to find the Boost header files. Please set BOOST_ROOT to the
> root
> 10> directory containing Boost or BOOST_INCLUDEDIR to the directory
> containing
> 10> Boost's headers.
>
> I guess that the building process hasn't download the whole Boost package,
> because A/CMakeExternals/Install/BOOST/
> lib/boost-1.X is missing. But I read
> here<http://docs.mitk.org/nightly-qt4/BuildInstructionsPage.html>that it
> should download boost 1.45.0 automatically.
>
> Attached BuildLog.
> What do you think that is missing?
>
> Regards,
> Miri
>
> On Mon, Feb 6, 2012 at 11:02 AM, Reicht, Ignaz <
> [email protected]> wrote:
>
>> Hi Miri,
>>
>> so far you have to activate the diffusionimaging module
>> (org.mitk.diffusionimaging). this module has its own factory which calls
>> appropriate mechanisms for fiber visualization (3D and 2D). the
>> mitkDiffusionimagefactory initializes the fiberbundlexmappers which are
>> responsible for rendering. if you want to interact with and process on your
>> fibers (colorcodings, cutting, etc.) org.mitk.gui.qt.diffusionimaging
>> provides efficient tools / views to do so.
>>
>> org.mitk.gui.qt.diffusionimagingapp
>> this is the bundle used for the standalone app for diffusionimaging (see
>> http://www.mitk.org/wiki/DiffusionImaging)
>>
>> The diffusionimaging module requires some headers of the Boost library,
>> therefore toggle this option (if not automatically done by CMake) and the
>> superbuild mechanism will take care of downloading all required Boost data.
>>
>> For your own application, if you dont want to use the diffusionimaging
>> module, mitkFiberBundleX, mitkFiberBundleXMapper2D/3D need to be ported to
>> your directory/module hosting all datastructures of your task.
>>
>> iggy
>>
>> -------------------------------------------------
>> Spelling Errors added by Apple OSX
>> intelligent word completion
>>
>> On Feb 5, 2012, at 10:53 PM, Miri Trope wrote:
>>
>> Dear Peter,
>>
>> Your suggestions were very helpful and I managed with this stage by
>> fstream ...
>> But, in order to use mitkFiberBundleX:
>>
>> - all the components of mitkDiffusionImaging must be built by CMake in
>> the configuration process?
>> |____org.mitk.diffusionimaging
>> |____org.mitk.gui.qt.diffusionimaging
>> |____org.mitk.gui.qt.diffusionimagingapp
>>
>> - I've tried to build those, but the MITK_use_Boost is needed- a stage
>> that I haven't succeeded to manage with due to some build errors ...
>>
>> There is other way to use this filter without the need of its building
>> process?
>>
>>
>> On Thu, Feb 2, 2012 at 2:55 PM, Peter Neher <[email protected]
>> <mailto:[email protected]>> wrote:
>> Hi Miri,
>>
>> .mat file import in MITK is not supported. You would either need to
>> export your matlab datastructure as vtk file format (maybe this site can
>> help you with that: http://www.exolete.com/recipes/matlab_vtk) or you'd
>> have to find some other way to import your data into mitk. If its just a
>> list of points it should not be too difficult to read the file using
>> fstream.
>>
>> Peter
>>
>>
>> On 02.02.2012 13:43, Miri Trope wrote:
>> Dear Peter,
>>
>>
>> Thank you very much for your kind and detailed explanation.
>> Please forgive me about the following q:
>> my fiber's data (fibers.mat) is represented as a structural object in
>> Matlab.
>> Does Mitk enable to import such a Matlab's data?
>> Anyway, how my program can read the data from that fiber.mat file?
>>
>>
>> Thanks in advance.
>>
>>
>> On Thu, Feb 2, 2012 at 1:00 PM, Peter Neher <[email protected]
>> <mailto:[email protected]>> wrote:
>> Hi Miri,
>>
>> to represent fiber tracts we use mitkFiberBundleX. This datastructure is
>> simply initialized using a vtkPolyData containing all your fiber data.
>> Simple example:
>>
>> vtkSmartPointer<vtkPolyData> fiberPolyData =
>> vtkSmartPointer<vtkPolyData>::New(); // the input datastructure for
>> mitkFiberBundleX
>> vtkSmartPointer<vtkCellArray> fiberContainer =
>> vtkSmartPointer<vtkCellArray>::New();
>> vtkSmartPointer<vtkPoints> pointContainer =
>> vtkSmartPointer<vtkPoints>::New();
>>
>> for (int l=0; l<numlines; l++) // iterate over fibers
>> {
>> vtkSmartPointer<vtkPolyLine> fiber =
>> vtkSmartPointer<vtkPolyLine>::New();
>> for (int p=0; p<pointsInLine; p++) // iterate over points in fiber
>> {
>> vtkIdType id = pointContainer->InsertNextPoint(yourPoint); //
>> add next point
>> fiber->GetPointIds()->InsertNextId(id); // add point id to fiber
>> }
>> fiberContainer->InsertNextCell(fiber); // add fiber to fiber
>> container
>> }
>>
>> fiberPolyData->SetPoints(pointContainer);
>> fiberPolyData->SetLines(fiberContainer);
>>
>> mitk::FiberBundleX::Pointer fiberBundle =
>> mitk::FiberBundleX::New(fiberPolyData);
>>
>> Peter
>>
>>
>> On 02.02.2012 07:47, Miri Trope wrote:
>> Hi All,
>>
>> How I should convert my fibers which is represented in .mat file in order
>> to be represented on mitk view?
>> i.e., I'd like to view my data as :
>> http://www.dkfz.de/de/mbi/images/neuro3.jpg
>> Note that my .mat file consists of [n] number of fibers which each fiber
>> [i] consists of number of points [j] like this:
>>
>> fibers[n]
>> |
>> |__fiber-i__
>> |
>> |___point-j(x,y,z)
>>
>>
>>
>> Please don't hesitate to ask if a further explanation is required ...
>> Anyway, any information/ method would be very appreciated!
>> Miri
>>
>>
>> --
>> Dipl.-Inform. Peter Neher
>> German Cancer Research Centre
>> (DKFZ, Deutsches Krebsforschungszentrum in der Helmholtz-Gemeinschaft,
>> Stiftung des öffentlichen Rechts)
>> Division of Medical and Biological Informatics
>> Im Neuenheimer Feld 280, D-69120 Heidelberg
>>
>> Phone: 49-(0)6221-42-3552, Fax: 49-(0)6221-42-2345
>> E-Mail: [email protected]<mailto:[email protected]>,
>> Web: www.dkfz.de<http://www.dkfz.de/>
>>
>> The information contained in this message may be confidential and
>> legally protected under applicable law. The message is intended solely for
>> the addressee(s). If you are not the intended recipient, you are hereby
>> notified that any use, forwarding, dissemination, or reproduction of this
>> message is strictly prohibited and may be unlawful. If you are not the
>> intended recipient, please contact the sender by return e-mail and destroy
>> all copies of the original message.
>>
>>
>> ------------------------------------------------------------------------------
>> Keep Your Developer Skills Current with LearnDevNow!
>> The most comprehensive online learning library for Microsoft developers
>> is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3,
>> Metro Style Apps, more. Free future releases when you subscribe now!
>> http://p.sf.net/sfu/learndevnow-d2d
>> _______________________________________________
>> mitk-users mailing list
>> [email protected]<mailto:[email protected]
>> >
>> https://lists.sourceforge.net/lists/listinfo/mitk-users
>>
>>
>>
>>
>> --
>> Dipl.-Inform. Peter Neher
>> German Cancer Research Centre
>> (DKFZ, Deutsches Krebsforschungszentrum in der Helmholtz-Gemeinschaft,
>> Stiftung des öffentlichen Rechts)
>> Division of Medical and Biological Informatics
>> Im Neuenheimer Feld 280, D-69120 Heidelberg
>>
>> Phone: 49-(0)6221-42-3552, Fax: 49-(0)6221-42-2345
>> E-Mail: [email protected]<mailto:[email protected]>,
>> Web: www.dkfz.de<http://www.dkfz.de/>
>>
>> The information contained in this message may be confidential and
>> legally protected under applicable law. The message is intended solely for
>> the addressee(s). If you are not the intended recipient, you are hereby
>> notified that any use, forwarding, dissemination, or reproduction of this
>> message is strictly prohibited and may be unlawful. If you are not the
>> intended recipient, please contact the sender by return e-mail and destroy
>> all copies of the original message.
>>
>>
>> ------------------------------------------------------------------------------
>> Try before you buy = See our experts in action!
>> The most comprehensive online learning library for Microsoft developers
>> is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3,
>> Metro Style Apps, more. Free future releases when you subscribe now!
>>
>> http://p.sf.net/sfu/learndevnow-dev2_______________________________________________
>> mitk-users mailing list
>> [email protected]
>> https://lists.sourceforge.net/lists/listinfo/mitk-users
>>
>>
>>
>> ------------------------------------------------------------------------------
>> Try before you buy = See our experts in action!
>> The most comprehensive online learning library for Microsoft developers
>> is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3,
>> Metro Style Apps, more. Free future releases when you subscribe now!
>> http://p.sf.net/sfu/learndevnow-dev2
>> _______________________________________________
>> mitk-users mailing list
>> [email protected]
>> https://lists.sourceforge.net/lists/listinfo/mitk-users
>>
>
>
>
------------------------------------------------------------------------------
Keep Your Developer Skills Current with LearnDevNow!
The most comprehensive online learning library for Microsoft developers
is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3,
Metro Style Apps, more. Free future releases when you subscribe now!
http://p.sf.net/sfu/learndevnow-d2d
_______________________________________________
mitk-users mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/mitk-users
