Hi Miri,
maybe you have alpready seen it in the other diffusion related mail
Sascha just answered. The module is called "MitkDiffusionImaging" not
"DiffusionImaging". I think the rest looks good. So if you activate all
the diffusion modules via cmake and include this dependency in your
cmakelists.txt it should work fine.
Best
Peter
On 14.02.2012 17:40, Miri Trope wrote:
Regarding section1 which I wrote:
I intended to write: DiffusionImaging (not ImageDiffusion).
- I'd like to mention that this directory is actually exist in the
same location as all the other dependencies that I've mentioned.
Best,
Miri.
On Tue, Feb 14, 2012 at 4:59 PM, Miri Trope <[email protected]
<mailto:[email protected]>> wrote:
Hi Peter,
OK, I thought that it's a repeating question.
So, here is the process with the corresponding errors:
After the build process, I just changed the codes of
awesomeProject (filter and plug-in) to mine, and tried to do these
things:
1) add a dependency to my MyAwesomeLib:
DEPENDS Mitk MitkExt Qmitk SceneSerialization ImageDiffusion
but it returned the error:
Module MyAwesomeLib won't be built, missing dependency:
DiffusionImaging
2) include at my filter's header the header (without that
dependency):
#include "mitkFiberBundleX.h"
but it returned an error:
A\mitk-superbuild\mitk-build\mitk-projecttemplate\modules\myawesomelib\AwesomeImageFilter.h(34)
: fatal error C1083: Cannot open include file:
'mitkFiberBundleX.h': No such file or directory
3) this command returned the error: (that header wasn't included):
mitk::FiberBundleX::Pointer fiberBundle =
mitk::FiberBundleX::New(fiberPD);
A\MITK-ProjectTemplate\Modules\MyAwesomeLib\AwesomeImageFilter.cpp(62)
: error C3083: 'FiberBundleX': the symbol to the left of a '::'
must be a type
Thank you for reading until the end :-)
Best,
Miri
On Tue, Feb 14, 2012 at 1:15 PM, Peter Neher
<[email protected] <mailto:[email protected]>>
wrote:
Hi Miri,
it would be better to send all your questions directly to the
mailinglist so that other members can also help or profit from
the conversation.
Regarding your problem, I am not sure what exactly "doesn't
work" mean. mitk::FiberBundleX is actually not a filter but a
datatype. Does the sample code I sent you compile or are there
any errors?
Best,
Peter
On 11.02.2012 21:56, Miri Trope wrote:
Hi Peter,
Regarding this filter which you have suggested:
_*mitk::FiberBundleX*_
What I should do in order to make that work?
What I've done:
- installed DiffusionImaging module.
- inserted: #include "mitkFiberBundleX.h"
- tried to add a dependency 'DiffusionImaging' in the
CMakeList.txt but it doesn't work.
I guess there are other things which I missed?...
Best Regards,
Miri
On Thu, Feb 2, 2012 at 1:00 PM, Peter Neher
<[email protected]
<mailto:[email protected]>> wrote:
Hi Miri,
to represent fiber tracts we use mitkFiberBundleX. This
datastructure is simply initialized using a vtkPolyData
containing all your fiber data.
Simple example:
vtkSmartPointer<vtkPolyData> fiberPolyData =
vtkSmartPointer<vtkPolyData>::New(); // the input
datastructure for mitkFiberBundleX
vtkSmartPointer<vtkCellArray> fiberContainer =
vtkSmartPointer<vtkCellArray>::New();
vtkSmartPointer<vtkPoints> pointContainer =
vtkSmartPointer<vtkPoints>::New();
for (int l=0; l<numlines; l++) // iterate over fibers
{
vtkSmartPointer<vtkPolyLine> fiber =
vtkSmartPointer<vtkPolyLine>::New();
for (int p=0; p<pointsInLine; p++) // iterate over
points in fiber
{
vtkIdType id =
pointContainer->InsertNextPoint(yourPoint); // add
next point
fiber->GetPointIds()->InsertNextId(id); // add
point id to fiber
}
fiberContainer->InsertNextCell(fiber); // add
fiber to fiber container
}
fiberPolyData->SetPoints(pointContainer);
fiberPolyData->SetLines(fiberContainer);
mitk::FiberBundleX::Pointer fiberBundle =
mitk::FiberBundleX::New(fiberPolyData);
Peter
On 02.02.2012 07:47, Miri Trope wrote:
Hi All,
How I should convert my fibers which is represented in
.mat file in order to be represented on mitk view?
i.e., I'd like to view my data as :
http://www.dkfz.de/de/mbi/images/neuro3.jpg
Note that my .mat file consists of [n] number of fibers
which each fiber [i] consists of number of points [j]
like this:
fibers[n]
|
|__fiber-i__
|
|___point-j(x,y,z)
Please don't hesitate to ask if a further explanation is
required ...
Anyway, any information/ method would be very appreciated!
Miri
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Stiftung des öffentlichen Rechts)
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Im Neuenheimer Feld 280, D-69120 Heidelberg
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strictly prohibited and may be unlawful. If you are not the intended recipient,
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original message.
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German Cancer Research Centre
(DKFZ, Deutsches Krebsforschungszentrum in der Helmholtz-Gemeinschaft, Stiftung
des öffentlichen Rechts)
Division of Medical and Biological Informatics
Im Neuenheimer Feld 280, D-69120 Heidelberg
Phone: 49-(0)6221-42-3552, Fax: 49-(0)6221-42-2345
E-Mail: [email protected], Web: www.dkfz.de
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protected under applicable law. The message is intended solely for the
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