Hi,
For potential future reference of someone searching the list: this did not
work because gdcm does not currently have the capability to preserve
diffusion gradient information in the split dicom files.
However, I read that MITK supports FSL DWI convention:
http://docs.mitk.org/nightly-qt4/org_mitk_gui_qt_diffusionimaging.html#QmitkDiffusionImagingUserManualFslImport
So I used the Mricron dcm2nii utility first, renamed my files
appropriately, and then imported as "fslgz".
Thanks,
Isaiah
On Tue, Mar 12, 2013 at 11:55 AM, Isaiah Norton <[email protected]>wrote:
> Hi Caspar,
> Thanks, that will work - I missed that tool.
> Best,
> Isaiah
>
>
> On Tue, Mar 12, 2013 at 6:03 AM, Goch, Caspar Jonas <
> [email protected]> wrote:
>
>> Hi Isaiah,****
>>
>> ** **
>>
>> MITK Diffusion does not currently support splitting mosaic files. You
>> might want to consider using gdcmtar to split these before loading in MITK
>> (using the --mosaic option[1]).****
>>
>> ** **
>>
>> Regards,****
>>
>> Caspar****
>>
>> ** **
>>
>> [1] http://gdcm.sourceforge.net/html/gdcmtar.html****
>>
>> ** **
>>
>> *Von:* Isaiah Norton [mailto:[email protected]]
>> *Gesendet:* Dienstag, 12. März 2013 00:33
>> *An:* [email protected]
>> *Betreff:* [mitk-users] MITK Diffusion with mosaic****
>>
>> ** **
>>
>> Hi,****
>>
>> ** **
>>
>> I am testing MITK Diffusion 2012.12 with a 64-direction diffusion dataset
>> acquired with a Siemens scanner and stored in mosaic-style DICOM. The DICOM
>> files are imported successfully, but the mosaic layout is maintained -- for
>> example the B0 remains as collection of slices in one 2D plane. DTI
>> reconstruction appears to work, but tractography does not (understandably
>> so).****
>>
>> ** **
>>
>> Am I overlooking an option to properly split Mosaic files?****
>>
>> ** **
>>
>> Thanks,****
>>
>> Isaiah****
>>
>
>
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