Hi Binod, if you have a binary image of the ROIs and the fiber bundle, simply select both and click the "Ending in Mask" button in the "Fiber Extraction" view.
Best, Peter On 08/19/2013 09:46 PM, Binod Thapa Chhetry wrote: > Hi all, > > I am new to MITK Diffusion. I was able to run Gibbs Tracking and get > the whole brain tractography results. I need extract fibers connecting > these two anatomical regions(binary masks in nii file format) that I > have. Unfortunately, I only see circle and polygon as roi in Fiber > Extraction menu. Is there a way I could assign anatomical regions (in > nii file format) as ROIs in fiber extraction? > > Thanks in advance for the response, > Binod -- Dipl.-Inform. Peter Neher German Cancer Research Center (DKFZ, Deutsches Krebsforschungszentrum in der Helmholtz-Gemeinschaft, Stiftung des öffentlichen Rechts) Division of Medical and Biological Informatics Im Neuenheimer Feld 280, D-69120 Heidelberg Phone: 49-(0)6221-42-3552, Fax: 49-(0)6221-42-2345 E-Mail: [email protected], Web: www.dkfz.de The information contained in this message may be confidential and legally protected under applicable law. The message is intended solely for the addressee(s). If you are not the intended recipient, you are hereby notified that any use, forwarding, dissemination, or reproduction of this message is strictly prohibited and may be unlawful. If you are not the intended recipient, please contact the sender by return e-mail and destroy all copies of the original message. ------------------------------------------------------------------------------ Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk _______________________________________________ mitk-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/mitk-users
