Ah you already found it :)
But we should probably extend our reader to also load files without the "s".
Cheers
Peter
On 08.10.2014 23:21, Axel Mancino wrote:
Ok, I'm feeling somehow shy about this... but it was my mistake...
apparently the "dcm2nii" converts to "file.bvec" and "file.bval" which
is not the same as "file.bvecs" and "file.bvals". All that was missing
was the "s".
I apologize for the inconveniences.
Regards,
Axel Mancino
El Miércoles, 8 de octubre, 2014 18:11:12, Axel Mancino
<[email protected]> escribió:
I should add some information:
I get the message ".bvals and .bvals files do not exist properly" in
the terminal while trying to load the file.fslgz. I have already
mentioned that I changed those files extensions too.
El Miércoles, 8 de octubre, 2014 17:45:17, Axel Mancino
<[email protected]> escribió:
Hi,
I'm having an issue with the "Import FSL" of the MITK Diffusion.
If I don't change the extensions of the files (although it is
suggested to be done so) the file.nii.gz is recognized by MITK, but
opened as a single 3D image, thus I cannot reconstruct the tensors. If
I change, however, the extensions of the files, once I try to open
them, nothing happens.
The original dicom images were converted from Siemens mosaic to FSL
format using the "dcm2niigui".
These are the FSL files:
https://www.dropbox.com/sh/32fysci5th0jkuf/AAD10_gM5KJUfmAqII3pP0vQa?dl=0
I should mention that I've already been able to obtain a full DTI
reconstruction from the 42 raw dicom images using the "dtk" program,
setting it as 22 b0 volumes and siemens20 gradient table.
Regards,
Axel Mancino
--
Dr. sc. hum. Peter F. Neher
Division Medical and Biological Informatics
Junior Group Medical Image Computing (MIC)
German Cancer Research Center (DKFZ)
Im Neuenheimer Feld 280
69120 Heidelberg
Germany
phone: +49 6221 42-3552
fax: +49 6221 42-2345
[email protected]
http://www.dkfz.de/de/mbi/people/Peter_Neher.html
Confidentiality Note:
This message is intended only for the use of the named recipient(s) and may
obtain confidential and/or privileged information. If you are not the intended
recipient, please contact the sender and delete the message. Any unauthorized
use of the information contained in this message is prohibited.
------------------------------------------------------------------------------
Meet PCI DSS 3.0 Compliance Requirements with EventLog Analyzer
Achieve PCI DSS 3.0 Compliant Status with Out-of-the-box PCI DSS Reports
Are you Audit-Ready for PCI DSS 3.0 Compliance? Download White paper
Comply to PCI DSS 3.0 Requirement 10 and 11.5 with EventLog Analyzer
http://pubads.g.doubleclick.net/gampad/clk?id=154622311&iu=/4140/ostg.clktrk
_______________________________________________
mitk-users mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/mitk-users
