Hi Nil, if the data is not confidential, you could maybe attach it to the task, just to have more test data. I am happy to open it in our app and send back a screenshot.
Note that the fix for this (PR160) implied other changes e.g. in the image navigator. If you apply only PR160, the images would be rendered in the correct orientation, but you might see wrong indices in the image navigator. You can eventually check out the 'niftk-2015.05.2' branch from our fork where the issues that I discovered are fixed, supposedly. This branch is based on an older version of MITK, though. https://github.com/NifTK/MITK Cheers, Miklos On 8 December 2016 at 12:43, Kislinskiy, Stefan <s.kislins...@dkfz-heidelberg.de> wrote: > Hi Nil, > > Depending on the reference frame of your input image data, the reinit in MITK > might not do what it is supposed to do. We have a task for this > (https://phabricator.mitk.org/T22254) and Miklos Espak provided a PR on > Github (https://github.com/MITK/MITK/pull/160). It would really help us to > evaluate the PR if you could check if it works for your data? > > Best, > Stefan > > > -----Original Message----- > From: Nil Goyette [mailto:nil.goye...@imeka.ca] > Sent: Donnerstag, 8. Dezember 2016 12:58 > To: mitk-users@lists.sourceforge.net > Subject: [mitk-users] Reinit and orientation > > Hi all, > > I was reading the RenderingManager code to understand how one would do a > Reinit while keeping the image orientation. For example, if the patient's > nose points to the right, then Reinit would align the image on the grid, as > it should, but the nose would still points right. > > Right now, Reinit is visually removing all transformations, without changing > any real data. I don't understand how it does though because the code is > complex and it goes quite deep. There's so much initialization code that's > it's easy to get lost in it. There's also this > preserveRoughOrientationInWorldSpace parameter which seems to do what I want > but is sadly unused. > > Can you please help me on this matter? > > Nil > > > ------------------------------------------------------------------------------ > Developer Access Program for Intel Xeon Phi Processors Access to Intel Xeon > Phi processor-based developer platforms. > With one year of Intel Parallel Studio XE. > Training and support from Colfax. > Order your platform today.http://sdm.link/xeonphi > _______________________________________________ > mitk-users mailing list > mitk-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/mitk-users > > ------------------------------------------------------------------------------ > Developer Access Program for Intel Xeon Phi Processors > Access to Intel Xeon Phi processor-based developer platforms. > With one year of Intel Parallel Studio XE. > Training and support from Colfax. > Order your platform today.http://sdm.link/xeonphi > _______________________________________________ > mitk-users mailing list > mitk-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/mitk-users ------------------------------------------------------------------------------ Developer Access Program for Intel Xeon Phi Processors Access to Intel Xeon Phi processor-based developer platforms. With one year of Intel Parallel Studio XE. Training and support from Colfax. Order your platform today.http://sdm.link/xeonphi _______________________________________________ mitk-users mailing list mitk-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/mitk-users
