Dear Dora,
Correct, we implemented this functionality in MITK 2016.11.
We faced some issues with MacOS since MITK 2016.11. Therefore, MacOS support of
MITK is currently only experimental (you can try to use the current master at
your own risk: https://phabricator.mitk.org/source/mitk/).
However, we are currently working on a new MITK release that will be available
this summer with MacOS support. So, the best solution is to wait for the new
release.
Regards
-Clemens
From: Admin Uniapp [mailto:contactuni...@gmail.com]
Sent: 29 June, 2018 13:32
To: Hentschke, Clemens <c.hentsc...@dkfz-heidelberg.de>
Subject: Re: [mitk-users] DICOM tags retrieval
I just realised I'm using MITK 2016.03 and this TagOfInterest does not exist in
the old version. Is there anyway around this? The reason I have not upgraded to
2016.11 is that I thought it is not compatible with MacOS. Any thoughts on this?
On Fri, Jun 29, 2018 at 12:13 PM, Admin Uniapp
<contactuni...@gmail.com<mailto:contactuni...@gmail.com>> wrote:
Dear Clemens,
Thank you for your detailed reply. I still can't load the #include
<mitkDICOMTagsOfInterestService.h> header. I changed the cmake in my custom
module to contain the MitkDICOMReaderServices but still not successful. Do you
have any idea what I might be missing? Many thanks for your help.
MITK_CREATE_MODULE(MyTestLib
DEPENDS MitkQtWidgetsExt MitkQtWidgets MitkAlgorithmsExt MitkCore
MitkDICOMReaderServices
PACKAGE_DEPENDS VMTK ITK
)
On Fri, Jun 29, 2018 at 10:09 AM, Hentschke, Clemens
<c.hentsc...@dkfz-heidelberg.de<mailto:c.hentsc...@dkfz-heidelberg.de>> wrote:
Additionally to what I wrote:
You find some documentation regarding reading of DICOM tags [1][2]. The second
source is new and tackles exactly your problem.
Regards
-Clemens
[1] http://mitk.org/wiki/DICOM_property_naming
[2] http://mitk.org/images/c/cd/DICOMMetaInformation.pdf
From: Hentschke, Clemens
[mailto:c.hentsc...@dkfz-heidelberg.de<mailto:c.hentsc...@dkfz-heidelberg.de>]
Sent: 29 June, 2018 09:52
To: Admin Uniapp <contactuni...@gmail.com<mailto:contactuni...@gmail.com>>
Cc: MITK
<mitk-users@lists.sourceforge.net<mailto:mitk-users@lists.sourceforge.net>>
Subject: Re: [mitk-users] DICOM tags retrieval
Dear Dora,
1) You’ll find an example of mitk::IDICOMTagsOfInterest*
GetDicomTagsOfInterestService() [1] in the Module DICOMRTIO in the class
DicomRTIOMimeTypes. See the CMakeLists [2] of that Module and the parent Module
[3]: MitkDICOMReaderServices is mandatory, you may need to include DCMTK too
for reading specific sequence tags (then use DICOMDCMTKTagScanner)
2) Yes. Have a look at DICOMSegmentationIO::AddDICOMTagsToService() [4].
It’s then available as property of BaseData.
3) The DICOM tags are available after loading via IOUtil as standardized
properties (e.g. DICOM.0010.0040 M). As alternative, you may also use the
DICOMDCMTKTagScanner [5], see RTDoseReaderService::Read() [6] for an usage
example.
You are right, we have to update our documentation about loading DICOM
properties.
Regards
-Clemens
[1]
https://phabricator.mitk.org/source/mitk/browse/master/Modules/DicomRT/autoload/IO/mitkDicomRTIOMimeTypes.cpp$246
[2]
https://phabricator.mitk.org/source/mitk/browse/master/Modules/DicomRT/autoload/IO/CMakeLists.txt
[3]
https://phabricator.mitk.org/source/mitk/browse/master/Modules/DicomRT/CMakeLists.txt
[4]
https://phabricator.mitk.org/source/mitk/browse/master/Modules/Multilabel/autoload/DICOMQIIO/mitkDICOMSegmentationIO.cpp$57
[5] http://docs.mitk.org/nightly/classmitk_1_1DICOMDCMTKTagScanner.html
[6]
https://phabricator.mitk.org/source/mitk/browse/master/Modules/DicomRT/autoload/IO/mitkRTDoseReaderService.cpp$73
From: Admin Uniapp [mailto:contactuni...@gmail.com]
Sent: 28 June, 2018 20:36
To: Goch, Caspar Jonas
<c.g...@dkfz-heidelberg.de<mailto:c.g...@dkfz-heidelberg.de>>
Cc: MITK
<mitk-users@lists.sourceforge.net<mailto:mitk-users@lists.sourceforge.net>>
Subject: Re: [mitk-users] DICOM tags retrieval
Dear Caspar,
Following my last question couple of months back about DICOM tags retrieval, I
tried to ignore this issue but it has come back now and I need to fix it. I
really needed a sample code for a concrete example and you kindly sent me a
link which has lines like:
IDICOMTagsOfInterest *toiService = GetDicomTagsOfInterestService();
My problems are:
1) I don't understand where this method is coming from
GetDicomTagsOfInterestService? I tried to include #include
<mitkIDICOMTagsOfInterest.h> but my template project which is based on the
sample on MITK website does not recognise it.
2) I need "Image Comments" as the tag to add to the BaseData of the node in
datamanager. My understanding is after having tagofinterestservice I can do:
toiService->AddTagOfInterest(DICOM.0020.4000); Is this right?
3) Finally, how the tag can be linked to my DICOM image which was read into
application like:
std::vector<mitk::BaseData::Pointer> baseDatas =
mitk::IOUtil::Load(seriesToLoad.front().toStdString());
I found few slides on the website but again it's not really an example and just
introduce this GetDicomTagsOfInterestService() function. Can you or somebody
please make this a little clearer?
Many thanks.
Dora
On Fri, Feb 9, 2018 at 9:57 AM, Goch, Caspar Jonas
<c.g...@dkfz-heidelberg.de<mailto:c.g...@dkfz-heidelberg.de>> wrote:
Hi Dora,
for a concrete example of an IO registering its own dicom tags of interest
check out the DICOMQIIO [1]. A slight caveat here is that this only works if
the TagsOfInterestService is already registered, but that has not been an issue
for us as of yet.
Best,
Caspar
[1]
https://phabricator.mitk.org/source/mitk/browse/master/Modules/Multilabel/autoload/DICOMQIIO/mitkDICOMSegmentationIO.cpp;50c3012e413e3b27d0bf906899fa5f24850adfd7$45-88
Von: Admin Uniapp
[mailto:contactuni...@gmail.com<mailto:contactuni...@gmail.com>]
Gesendet: Donnerstag, 8. Februar 2018 20:26
An: Goch, Caspar Jonas
Cc: MITK
Betreff: Re: [mitk-users] DICOM tags retrieval
Hi Casper,
Thanks for your reply. I checked the links you sent but can you please help
with a more concrete example on how to use this DICOMTagsOfInterestService.
auto tagsOfInterestService = GetDefaultDICOMTagsOfInterest();
tagsOfInterestService->AddTagOfInterest(DICOMTag(0x0020, 0x4000));
QString path = "path_to_dicom_folders";
mitk::IOUtil::Load(path.toStdString(), *this->GetDataStorage());
This is what I intended to start with. I'm not sure how to retrieve this
tagofInterestSerive and link it with the mitk IO utility tools.
Many thanks in advance.
On Thu, Jan 25, 2018 at 12:05 PM, Goch, Caspar Jonas
<c.g...@dkfz-heidelberg.de<mailto:c.g...@dkfz-heidelberg.de>> wrote:
Hi Dora,
Dicom tags have been restructured a while ago. You can now use the
DICOMTagsOfInterestService [1] to manage which tags should be added to the
nodes [2]. An idea of what tags are usually added if present can be found by
perusing our default tags of interest [3]. If you want to check in the
application what properties have been added to your data you can:
1. Go to Window->Preferences->Properties and enable the developer mode
2. Open the property list view
3. Select your image in the data manager
4. Switch the combobox in the property list view to base data
You will see all properties in the base data property list, all Dicom
properties should have the name DICOM.XXXX.XXXX, presumably DICOM.0020.4000 for
the attribute Image Comments.
Best,
Caspar
[1] http://docs.mitk.org/nightly/classmitk_1_1DICOMTagsOfInterestService.html
[2] http://www.mitk.org/images/c/cd/DICOMMetaInformation.pdf
[3]
https://phabricator.mitk.org/source/mitk/browse/master/Modules/DICOMReader/src/mitkDICOMTagsOfInterestHelper.cpp
Von: Admin Uniapp
[mailto:contactuni...@gmail.com<mailto:contactuni...@gmail.com>]
Gesendet: Dienstag, 23. Januar 2018 18:52
An: MITK
Betreff: [mitk-users] DICOM tags retrieval
Hello all,
I have managed in the past to retrieve DICOM tags using the node and the
property list of nodes and using a key to find its corresponding value:
node->GetData()->GetPropertyList()->GetStringProperty("dicom.series.SeriesDescription",
seriesDescription);
I'm working with a new series of DICOM images where they have a tag called
"Image Comments". The same approach doesn't work as I don't know what key to
use. Is there anyway to print out all the tags associated with a DICOM data
node in MITK?
Many thanks in advance.
Dora
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