Hi Matt, please excuse the delayed response.
As Marco has pointed out I fear the best source of truth is the code itself. But at least to help you with finding it. Not all, but most of the 3D segmentation tools (3D Region growing is missing) have been refactored and derive now from mitk::AutoSegmentationWithPreviewTool (https://docs.mitk.org/2021.02/classmitk_1_1AutoSegmentationWithPreviewTool.html). To find the code that does the segmentation you always have to look for the override of DoUpdatePreview() in the derived classes. Hope that helps a bit. Best Rafl ------------------------------------------------- Date: Wed, 3 Mar 2021 17:14:17 +0000 From: "Nolden, Marco" <m.nol...@dkfz-heidelberg.de> To: "Clarkson, Matt" <m.clark...@ucl.ac.uk>, "mitk-users@lists.sourceforge.net" <mitk-users@lists.sourceforge.net> Subject: Re: [mitk-users] Segmentation Algorithms Message-ID: <614b55fb35864cc29b545a893e2c4...@dkfzex02n2.ad.dkfz-heidelberg.de> Content-Type: text/plain; charset="utf-8" Hi Matt, I think the source code is the best reference ;) I would assume it?s mostly ITK based, e.g. https://phabricator.mitk.org/source/mitk/browse/develop/Modules/Segmentation/Interactions/mitkWatershedTool.cpp$107 for the watershed. Hope that helps. Marco Von: Clarkson, Matt <m.clark...@ucl.ac.uk> Gesendet: Dienstag, 2. M?rz 2021 20:49 An: mitk-users@lists.sourceforge.net Betreff: [mitk-users] Segmentation Algorithms Hi Everyone, Can someone point me towards exactly which algorithms are implemented in the 3D segmentation plugins. Eg. Fast Marching 3D, Region Growing 3D, Watershed? I did try looking in the documentation, but they are fairly brief. I presume these are classic algorithms, but it would be good to know exactly the algorithm or have a paper reference, as there are so many variants of similar algorithms. Thanks Matt -------------- next part -------------- An HTML attachment was scrubbed... ------------------------------
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