Dear Yuxuan Liu,
Thank you for your email.
You have indicated that you use 'pyenv' for virtual environment creation on
Windows.
Anyway, we are tested only for virtual environments created using the python
standard 'venv' (https://docs.python.org/3/library/venv.html).
The error message has nothing to do with back slash or a wrong path generated
by MITK. This pop-up happens because TotalSegmentator didn't work to produce
any output in the python process where MITK was expecting it.
We encourage you to install Totalsegmentator via MITK. Please note that the
installation via MITK will not tamper the "system python". It will another
virtual environment using the "system python" provided in an MITK maintained
directory.
In case you want to continue with custom environment option, then manually
create a virtual env using python standard 'venv' using command: python -m venv
<folder_path>
We sincerely hope that it works out.
Let us know if you have more questions.
Thanks
Ashis Ravindran
Medizinische Bildverarbeitung (E230)
Research Software Engineer
Deutsches Krebsforschungszentrum
Stiftung des öffentlichen Rechts
Im Neuenheimer Feld 280
69120 Heidelberg
ashis.ravind...@dkfz-heidelberg.de
www.dkfz.de
Vorstand: Prof. Dr. Michael Baumann, Ursula Weyrich
USt-ID: DE143293537
________________________________________
Von: Yuxuan Liu <liuyuxuan...@gmail.com>
Gesendet: Samstag, 16. März 2024 09:12
An: mitk-users@lists.sourceforge.net
Betreff: [Extern] - [mitk-users] MITK TotalSeg Plugin Issue On Windows Platform
[ScreenShot.PNG]
Dear developers at MITK,
I am having issues when using the TotalSegmentator tool on doing
segmentation on Windows platform. I'm now using the MITK v2013.12 with pytorch
and totalsegmentator already installed in my system. There is no issue when
using TotalSeg via the command-line tool. I use pyenv for python version
management. I tried to Run TotalSeg with Use Custom checked and selected Custom
ENV as my pyenv environment. MITK did detect my custom TotalSeg installation,
but seem not running properly, and pop out an error said that can not find
output file after a few seconds. Is there a problem on path handling (2
backslashes between TEMP folder path and following) or a problem on handling
custom installation of TotalSeg? Hoping to get a fix by the next release
version.
Thanks very much!
--
Yuxuan Liu
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