Hi everyone,

I'm using geometric morphometrics to study variation in the shell 
morphology of the common whelk. I'm really interested in using 3D images as 
a basis for this study but I'm having problems with manipulation and 
registration (e.g. rigid registration) of my images prior to digitizing of 
landmarks. 

I'm using a MakerBot® Digitizer™ Desktop 3D Scanner for capturing the 3D 
images and it generates either .stl or .ply files that I read into the R 
for digitizing. My problem is that when I read those files into the R they 
are not all oriented in the same way inside the box in the rgl window, thus 
it is very hard to align them reliably so that the landmarks are truly 
comparable between individuals. 

So my question to you all is if you know of a method to align or register 
the 3D images before I read them into R? Or of a package in R that can 
perform this action?

I would be very grateful for any advice on this,

Hildur


Hildur Magnúsdóttir
PhD Student
University of Iceland, Department of Life and Environmental Sciences
and Hólar University College, Department of Aquaculture and Fish Biology
Telephone: +354 823 2485

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