Mike, does this mean that, in general, the position of the semilandmarks is strongly sample dependent, which would mean that also the shape distances might change remarkably despite the fact one has the same number of points on exactly the same surface? Say that I have two samples, A and B. I first (1) superimpose (and slide) within A. Then I do the same with both A and B together (2). Could I get appreciable differences between A1 and A2 just because of the sliding?

All Procrustes shape distances depend on the sample composition. However, in my experience, differences between A1 and A2 tend to be negligible with 'standard' landmarks. Is this different with semilandmarks? Are there sensitivity analyses that explore the issue (if it's an issue)?

Thanks in advance.
Cheers

Andrea

At 17:06 18/02/2016, Collyer, Michael wrote:
Contrary to your logic, subsetting your sample could have an effect. Your mean configuration would change in each of the subsamples, from the mean of your original sample, thus changing the reference configuration used in the separate GPAs performed. The reference configuration has a prominent role in the sliding of landmarks.


Dr. Andrea Cardini
Researcher, Dipartimento di Scienze Chimiche e Geologiche, Università di Modena e Reggio Emilia, Via Campi, 103 - 41125 Modena - Italy
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Adjunct Associate Professor, Centre for Forensic Science , The University of Western Australia, 35 Stirling Highway, Crawley WA 6009, Australia

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