Hi Eric,
many thanks for your reply.  That worked I think?  mert-moses-run.out said:

After default: -l mem_free=0.5G -hard
Using SCRIPTS_ROOTDIR: /usr/share/moses/scripts
SYNC distortionchecking weight-count for ttable-file
checking weight-count for lmodel-file
checking weight-count for distortion-file
Executing: mkdir -p europarl/tuning
Executing: /usr/share/moses/scripts/training/filter-model-given-input.pl
./filtered /home/llio/MOSES/model/moses.ini
/home/llio/MOSES/europarl/tuning/input
filtering the phrase tables... Sat Aug 23 16:16:48 BST 2008
Executing: mkdir -p /home/llio/MOSES/europarl/tuning/filtered
Considering factor 0
Considering factor 0

It took a few seconds, which surprised me because the tutorial said:
'Note that this step can take many hours, even days, to run.'
But I've ended up with a filtered folder containing

-rw-r--r-- 1 llio llio      1048 2008-08-23 16:16 moses.ini
-rw-r--r-- 1 llio llio 204201984 2008-08-23 16:23 phrase-table.0-0.1

(the date and time are wrong on this machine).

Llio




On Wed, Aug 20, 2008 at 1:12 AM, Eric Nichols <[EMAIL PROTECTED]> wrote:
> Greetings,
>
> That line in mert-moses.pl is checking to see if moses is executable
> but can't find it.
> Replace moses in your command with /usr/bin/moses :
>
> mert-moses.pl europarl/tuning/input europarl/tuning/reference /usr/bin/moses
> model/moses.ini --working-dir europarl/tuning --rootdir
> /usr/share/moses/scripts >&mert-moses-run.out
>
> Eric Nichols
>
> On Wed, Aug 20, 2008 at 12:40 AM, Llio Humphreys <[EMAIL PROTECTED]> wrote:
>> Dear Eric/Moses Support Group,
>>
>> I am using Ubuntu with 3.5GB RAM and finally got
>> train-factored-phrase-model.perl to run!
>> I am now on the tuning part of the tutorial, and I'm still using the
>> Baseline data to test out the system on my machine.
>> I adapted the command for tuning from:
>>
>> bin/moses-scripts/scripts-YYYYMMDD-HHMM/training/mert-moses.pl
>> working-dir/tuning/input working-dir/tuning/reference
>> moses/moses-cmd/src/moses working-dir/model/moses.ini --working-dir
>> working-dir/tuning --rootdir bin/moses-scripts/scripts-YYYYMMDD-HHMM
>>
>> to
>>
>> mert-moses.pl europarl/tuning/input europarl/tuning/reference moses
>> model/moses.ini --working-dir europarl/tuning --rootdir
>> /usr/share/moses/scripts >&mert-moses-run.out
>>
>> I get the error message:
>>
>> After default: -l mem_free=0.5G -hard
>> Using SCRIPTS_ROOTDIR: /usr/share/moses/scripts
>> Not executable: moses at /usr/bin/mert-moses.pl line 297.
>>
>> mert-moses.pl line 297 is empty but the previous line says:
>>
>> die "Not executable: $___DECODER" if ! -x $___DECODER;
>>
>> Grateful for your advice.
>>
>> Thanks,
>> Llio Humphreys
>>
>>
>>
>>
>> On Thu, Aug 14, 2008 at 12:52 PM, Eric Nichols <[EMAIL PROTECTED]> wrote:
>>> Greetings,
>>>
>>> In the moses package, I install everything into /usr/share/moses and
>>> symlink the scripts and moses command into /usr/bin.
>>> You can see a list of installed files by running the following command:
>>>
>>> # dpkg -L moses
>>>
>>> When you call a command like ngram-count or
>>> train-factored-phrase-model.perl, you do not need to specify the full
>>> path;
>>> the system will be able to find it. I do not know if it is strictly
>>> necessary to set -scripts-root-dir, but the value
>>> /usr/share/moses/scripts works fine.
>>>
>>> Eric Nichols
>>>
>>> On Thu, Aug 14, 2008 at 8:02 PM, Llio Humphreys <[EMAIL PROTECTED]> wrote:
>>>> Dear Murat, Anung, Hieu, Josh, Eric, Miles, Sara, Amittai,
>>>> thank you all for your help.  It is very, very much appreciated. I
>>>> decided to try Eric's packages, and it looks like the installation
>>>> worked.  I typed some of the
>>>>  commands in the Baseline instructions without arguments, and the
>>>>  program either output to the screen that I missed some arguments or
>>>>  gave a description of the program.  Thank you Eric!!!
>>>>
>>>>  Following the Baseline instructions
>>>>  (http://www.statmt.org/wmt08/baseline.html) I have now got to the
>>>>  following step:
>>>>
>>>>  Use SRILM to build language model:
>>>>  /path-to-srilm/bin/i686/ngram-count -order 5 -interpolate -kndiscount
>>>>  -text working-dir/lm/europarl.lowercased -lm
>>>>  working-dir/lm/europarl.lm
>>>>
>>>>  In my case, I was in folder home/llio/MOSESMTDATA.  I didn't know the
>>>>  path to ngram-count, but it was possible to invoke it without the
>>>>  path:
>>>>
>>>>  ngram-count -order 5 -interpolate -kndiscount -text
>>>>  europarl/lm/europarl.lowercased -lm europarl/lm/europarl.lm
>>>>
>>>>  I'm concerned about two things:
>>>>  1) this ngram-count step is taking a very long time.  I think I started
>>>>  it off around 6pm yesterday, but it's still going.  It's very
>>>>  resource-intensive, and it's difficult to get to  other windows open.
>>>>  I went to check up on it around 9pm, and couldn't find that particular
>>>>  terminal.  I thought I had closed that terminal by mistake, so I stupidly
>>>>  opened another one, and entered the same command.  I subsequently
>>>>  found that the original terminal was still open, so I closed the
>>>>  second one.  I'm not sure if issuing this command a second time on the
>>>>  same program and files on a different terminal would corrupt the
>>>>  original ngramcount step, and whether I should start it off again, or
>>>>  whether starting it off again would make things worse?   I looked up
>>>>  ngram-count 
>>>> (http://www.speech.sri.com/projects/srilm/manpages/ngram-count.1.html)
>>>>  and I don't think it outputs to any file, so I guess you have to be in
>>>>  the same terminal to do the next step?  I opened
>>>>  another terminal and typed 'top' to see what processes are running,
>>>>  and I know that ngram-count is doing something, but whether it's doing
>>>>  well or stuck in a loop, I can't say.  What I do find strange is that
>>>> the time for ngram-count is said to be 00:58:20, and it's been going
>>>> for hours.. I searched this problem in previous Moses Group emails and
>>>> I understand that if I run this with order 4 instead of 5 it will run
>>>> quicker with very similar results?  So, can I just stop what it's
>>>> doing, and run this command in the same terminal with order 4?  Are
>>>> there any files I need to 'touch' to ensure that it doesn't leave any
>>>> stone unturned?
>>>>
>>>>  2) how to do the next step:
>>>>
>>>>  
>>>> bin/moses-scripts/scripts-YYYYMMDD-HHMM/training/train-factored-phrase-model.perl
>>>>  -scripts-root-dir bin/moses-scripts/scripts-YYYYMMDD-HHMM -root-dir
>>>>  working-dir -corpus working-dir/corpus/europarl.lowercased -f fr -e en
>>>>  -alignment grow-diag-final-and -reordering msd-bidirectional-fe -lm
>>>>  0:5:working-dir/lm/europarl.lm:0
>>>>
>>>> I assume that like ngram-count, I can just type in
>>>> train-factored-phrase-model.perl without the full path...Do I need to
>>>> set the -scripts-root-dir paramater?  Are all the scripts in the same
>>>> place?
>>>>
>>>> Thank you,
>>>>
>>>> Llio
>>>>
>>>>
>>>>
>>>>
>>>>  On 8/14/08, Murat ALPEREN <[EMAIL PROTECTED]> wrote:
>>>>  > Dear Llio,
>>>>  >
>>>>  > You should be okay with installing moses finally if you have installed 
>>>> all
>>>>  > tha dependant packages before. I am not aware of the 'whereis' command, 
>>>> but
>>>>  > once you train your model, your moses.ini file which is created by 
>>>> training
>>>>  > script will take care of the paths. However, you should carefully supply
>>>>  > paths while training your model. Before training your model, you should 
>>>> have
>>>>  > two seperate corpus files which are lowercased, sentence aligned and
>>>>  > accordingly tokenized (there are supplementary tools for this). Once you
>>>>  > have your corpus in two seperate files such as corpus.en, and corpus.fr 
>>>> you
>>>>  > will run a training perl script: train-factored-phrase-model.pl with 
>>>> various
>>>>  > parameters. If you need further help with this command after installing
>>>>  > moses and all training scripts, send me a reply including your exact 
>>>> path
>>>>  > for your corpus files and I will try to figure out the training command 
>>>> for
>>>>  > your paths.
>>>>  >
>>>>  > Cheers
>>>>  >
>>>>  >
>>>>  > On 8/13/08, Llio Humphreys <[EMAIL PROTECTED]> wrote:
>>>>  > > Hi Murat,
>>>>  > > thanks for this.  I've got Ubuntu 8.04 so the Hardy Heron packages are
>>>>  > > what I need also
>>>>  > > (http://cl.naist.jp/~eric-n/ubuntu-nlp/dists/hardy/all/).
>>>>  > >
>>>>  > > I think I already got the order wrong...(sign of panic maybe?)
>>>>  > > I clicked on mckls deb and the package installer said it was already
>>>>  > installed.
>>>>  > > I clicked on srilm deb and the package installer said it was already
>>>>  > > installed, so I clicked Reinstall package.
>>>>  > >
>>>>  > > I can't find anything that says the order of installation, but note
>>>>  > > that the workshop baseline model requires installing giza before mckls
>>>>  > > Do I need to uninstall mkcls (if so how? is it just a matter of
>>>>  > > deleting the .exc file?) or is it enough to click on Reinstall
>>>>  > > package?
>>>>  > >
>>>>  > > When all this is done, how do I use Moses?  Many of the commands in
>>>>  > > the baseline model
>>>>  > (http://www.statmt.org/wmt08/baseline.html) require
>>>>  > > pathnames to the various scripts and data:  is it necessary to amend
>>>>  > > these commands or can I just type 'whereis' command to find what I
>>>>  > > need?
>>>>  > >
>>>>  > > Thanks,
>>>>  > > Llio
>>>>  > >
>>>>  > >
>>>>  > > On Wed, Aug 13, 2008 at 1:48 PM, Murat ALPEREN <[EMAIL PROTECTED]>
>>>>  > wrote:
>>>>  > > > Dear Llio,
>>>>  > > >
>>>>  > > > Eric's page will probably help you, I have installed pre-compiled 
>>>> debian
>>>>  > > > based Ubuntu - Hardy Heron packages. All the necessary binaries are
>>>>  > included
>>>>  > > > in Eric's repository which will guide you for the dependancies, that
>>>>  > means
>>>>  > > > there's an order of installation which you should follow. As far as 
>>>> I
>>>>  > > > remember you should first install srilm, then mkcls, giza and 
>>>> finally
>>>>  > moses.
>>>>  > > > Then you will be able to train your models or run any model on your
>>>>  > machine
>>>>  > > >
>>>>  > > > Regards
>>>>  > > >
>>>>  > > >
>>>>  > > > On 8/13/08, Anung Ariwibowo <[EMAIL PROTECTED]> wrote:
>>>>  > > >>
>>>>  > > >> Hi Llio,
>>>>  > > >>
>>>>  > > >> I can compile SRILM in Linux Ubuntu without problem. Can you post 
>>>> the
>>>>  > > >> error message here, maybe we can help.
>>>>  > > >>
>>>>  > > >> Cheers,
>>>>  > > >> Anung
>>>>  > > >>
>>>>  > > >> On Wed, Aug 13, 2008 at 8:29 PM, Llio Humphreys <[EMAIL PROTECTED]>
>>>>  > > >> wrote:
>>>>  > > >>>
>>>>  > > >>> Dear Josh/Hieu,
>>>>  > > >>> many thanks for your replies.  The default shell is bash, and 
>>>> updating
>>>>  > > >>> the .profile file worked - thanks for that tip.  I look forward to
>>>>  > > >>> hearing more from you about the ./model/extract.0-0.o.part* 
>>>> problem.
>>>>  > > >>> My apologies for my ignorance of Unix matters: I'd like to think 
>>>> of
>>>>  > > >>> myself as a newbie rather than one who is averse to learning about
>>>>  > > >>> these things, and the further information you have provided has 
>>>> been
>>>>  > > >>> useful and interesting.  Hieu mentioned that Anung Ariwibowo got 
>>>> Moses
>>>>  > > >>> to work when he transferred to a Linux machine.  A colleague has
>>>>  > > >>> kindly let me borrow a Linux/Ubuntu machine, but I have already 
>>>> run
>>>>  > > >>> into problems compiling SRILM!  So, I'll see if Eric Nichols's
>>>>  > > >>> packages will take care of that:
>>>>  > > >>>
>>>>  > http://cl.naist.jp/~eric-n/ubuntu-nlp/dists/feisty/nlp/
>>>>  > > >>> Best regards,
>>>>  > > >>> Llio
>>>>  > > >>>
>>>>  > > >>>
>>>>  > > >>>
>>>>  > > >>> On 8/13/08, Josh Schroeder <[EMAIL PROTECTED]> wrote:
>>>>  > > >>> > Hi Llio,
>>>>  > > >>> >
>>>>  > > >>> >
>>>>  > > >>> > > you may have already received my email on the following 
>>>> problem
>>>>  > when
>>>>  > > >>> > > building the language model:
>>>>  > > >>> > >
>>>>  > > >>> > > Executing: cat ./model/extract.0-0.o.part* > 
>>>> ./model/extract.0-0.o
>>>>  > > >>> > > cat: ./model/extract.0-0.o.part*: No such file or directory
>>>>  > > >>> > > Exit code: 1
>>>>  > > >>> > >
>>>>  > > >>> >
>>>>  > > >>> >  That's building the phrase table, not the language model. It 
>>>> seems
>>>>  > > >>> > like
>>>>  > > >>> > several people on the list are having problems with this step, 
>>>> so
>>>>  > I'm
>>>>  > > >>> > going
>>>>  > > >>> > to take a look at the training process and post something to the
>>>>  > list
>>>>  > > >>> > in the
>>>>  > > >>> > next day or two.
>>>>  > > >>> >
>>>>  > > >>> >
>>>>  > > >>> > >
>>>>  > > >>> > > 1. You mention that Moses does not use environment variables.
>>>>  > > >>> > > However, in order to get SRILM to work, I found it necessary 
>>>> to
>>>>  > > >>> > > create
>>>>  > > >>> > > environment variables and pass these on to SRILM's make:
>>>>  > > >>> > >
>>>>  > > >>> > > make SRILM=$PWD MACHINE_TYPE=macosx
>>>>  > > >>> > >
>>>>  > > >>> >
>>>>  > > >>> >
>>>>  > 
>>>> PATH=/bin:/sbin:/usr/bin:/usr/sbin:/Users/lliohumphreys/MT/MOSESSUITE/srilm:/Users/lliohumphreys/MT/MOSESSUITE/srilm/bin:/Users/lliohumphreys/MT/MOSESSUITE/srilm/bin/macosx:/sw/bin/gawk
>>>>  > > >>> > >
>>>>  > MANPATH=/Users/lliohumphreys/MT/MOSESSUITE/srilm/man
>>>>  > > >>> > LC_NUMERIC=C
>>>>  > > >>> > >
>>>>  > > >>> > > In addition, I was also required to type in the following 
>>>> command
>>>>  > for
>>>>  > > >>> > > moses-scripts:
>>>>  > > >>> > >
>>>>  > > >>> > > export
>>>>  > > >>> >
>>>>  > > >>> >
>>>>  > 
>>>> SCRIPTS_ROOTDIR=/Users/lliohumphreys/MT/MOSESSUITE/bin/moses-scripts/scripts-20080811-1801
>>>>  > > >>> > >
>>>>  > > >>> > >
>>>>  > > >>> >
>>>>  > > >>> >  Sorry, I should have been more clear. Moses itself, the decoder
>>>>  > that
>>>>  > > >>> > loads
>>>>  > > >>> > a trained phrase table and language model and translates text, 
>>>> is a
>>>>  > > >>> > self-contained command-line program that doesn't require 
>>>> environment
>>>>  > > >>> > variables.
>>>>  > > >>> >
>>>>  > > >>> >  Your first example is compiling SRILM. This is not part of the
>>>>  > Moses
>>>>  > > >>> > toolkit: it's a toolkit of its own for language modeling and a 
>>>> ton
>>>>  > of
>>>>  > > >>> > other
>>>>  > > >>> > stuff. We use it as one of two possible integrated language 
>>>> models
>>>>  > (the
>>>>  > > >>> > other is IRSTLM) with Moses.
>>>>  > > >>> >
>>>>  > > >>> >  Your second example is part of the training regime. Yes, there 
>>>> is
>>>>  > some
>>>>  > > >>> > use
>>>>  > > >>> > of the SCRIPTS_ROOTDIR in the
>>>>  > > >>> > train-factored-phrase-model.perl, but for most
>>>>  > training
>>>>  > > >>> > support scripts that come with moses there is a flag that lets 
>>>> you
>>>>  > > >>> > specify
>>>>  > > >>> > SCRIPTS_ROOTDIR at the command line instead of storing it as an
>>>>  > > >>> > environment
>>>>  > > >>> > variable. In train-factored-phrase-model it's 
>>>> "-scripts-root-dir",
>>>>  > > >>> > which I
>>>>  > > >>> > think you've actually used in one of your other emails.
>>>>  > > >>> >
>>>>  > > >>> >
>>>>  > > >>> >
>>>>  > > >>> > > If I open a new terminal and echo these variables, most of 
>>>> them
>>>>  > are
>>>>  > > >>> > > blank, and PATH just gives the default bin paths.
>>>>  > > >>> > >
>>>>  > > >>> > > So, how do I make them permanent?  I assume that if I want to 
>>>> use
>>>>  > > >>> > > Moses again, it needs to have access to these variables?  How 
>>>> can
>>>>  > I
>>>>  > > >>> > > ensure that I can close the terminal, go home, open a new 
>>>> terminal
>>>>  > > >>> > > the
>>>>  > > >>> > > next day and get Moses working again?  A colleague suggested I
>>>>  > update
>>>>  > > >>> > > the .bashrc file to update each new terminal session with 
>>>> these
>>>>  > > >>> > > environment variables. However, my Mac system does not appear 
>>>> to
>>>>  > have
>>>>  > > >>> > > a .bashrc system as a default, and when I created one in my 
>>>> home
>>>>  > > >>> > > directory and opened a new terminal, it did not access the 
>>>> .bashrc
>>>>  > > >>> > > file.
>>>>  > > >>> > >
>>>>  > > >>> >
>>>>  > > >>> >  Here's some info on environment variables on the Mac, found 
>>>> with a
>>>>  > > >>> > quick
>>>>  > > >>> > Google search:
>>>>  > > >>>
>>>>  > >  http://www.macdevcenter.com/pub/a/mac/2004/02/24/bash.html
>>>>  > > >>> >
>>>>  > > >>> >  I tried it with .profile, that worked fine. Are you sure 
>>>> you're set
>>>>  > to
>>>>  > > >>> > use
>>>>  > > >>> > the bash shell? Try ' echo $SHELL ' in Terminal.
>>>>  > > >>> >
>>>>  > > >>> >
>>>>  > > >>> > > 2. You say that you ran the decoder on your laptop just fine, 
>>>> but
>>>>  > had
>>>>  > > >>> > > to change a few scripts for training.  I have very basic 
>>>> knowledge
>>>>  > of
>>>>  > > >>> > > Unix systems and installing open-source software: would it be
>>>>  > > >>> > > possible
>>>>  > > >>> > > for you to detail the changes you did to the scripts to get 
>>>> it to
>>>>  > run
>>>>  > > >>> > > on a Mac?  Although I need this information urgently, it may 
>>>> also
>>>>  > be
>>>>  > > >>> > > useful for other students who are installing Moses on a Mac 
>>>> and
>>>>  > who
>>>>  > > >>> > > may also have basic knowledge of Unix installation procedures.
>>>>  > > >>> > >
>>>>  > > >>> >
>>>>  > > >>> >  I'll look into this. Mac isn't really the platform of choice 
>>>> for
>>>>  > > >>> > training a
>>>>  > > >>> > Moses model and I do most of my work on linux. If I recall
>>>>  > correctly,
>>>>  > > >>> > an
>>>>  > > >>> > Intel-based Mac should be easier to get working than a PowerPC 
>>>> one.
>>>>  > The
>>>>  > > >>> > *decoder* does work on my Intel-based laptop, but I haven't run 
>>>> a
>>>>  > full
>>>>  > > >>> > training setup locally in some time -- most of the time we're
>>>>  > working
>>>>  > > >>> > with
>>>>  > > >>> > so much data that I use a cluster of linux machines instead of 
>>>> my
>>>>  > Mac.
>>>>  > > >>> >
>>>>  > > >>> >  As a word of caution: Moses isn't an out-of-the box translation
>>>>  > > >>> > solution
>>>>  > > >>> > for end users. It's research software undergoing active 
>>>> development,
>>>>  > so
>>>>  > > >>> > almost every user -- on any platform --  will need to muck 
>>>> around in
>>>>  > > >>> > the
>>>>  > > >>> > scripts at some point, or face a compile error or runtime 
>>>> crash. The
>>>>  > > >>> > ability
>>>>  > > >>> > to deal with unix/linux command line tools, and debug code and
>>>>  > scripts
>>>>  > > >>> > when
>>>>  > > >>> > necessary, is really important. That being said, I'll see what 
>>>> I can
>>>>  > do
>>>>  > > >>> > about highlighting where the scripts might have problems on the 
>>>> Mac.
>>>>  > > >>> >
>>>>  > > >>> >
>>>>  > > >>> > > 3. My final question: which is embarrasingly basic...can I 
>>>> use the
>>>>  > > >>> > > one
>>>>  > > >>> > > installation of Moses for different corpora, or do I need to 
>>>> do a
>>>>  > > >>> > > separate installation for each one?  Can I have separate
>>>>  > > >>> > > installations
>>>>  > > >>> > > of SRILM, Giza and mckls, or should they all reference the 
>>>> same
>>>>  > > >>> > > libraries?
>>>>  > > >>> > >
>>>>  > > >>> >
>>>>  > > >>> >  All you need to do to have moses use different corpora is 
>>>> point it
>>>>  > to
>>>>  > > >>> > a
>>>>  > > >>> > different moses.ini file. Assuming you have compiled moses with
>>>>  > support
>>>>  > > >>> > for
>>>>  > > >>> > the language model specified in the file (IRSTLM or SRILM), it 
>>>> will
>>>>  > > >>> > translate. You should only need one copy of giza, mkcls, 
>>>> irst/srilm,
>>>>  > > >>> > and
>>>>  > > >>> > moses. The code stays the same, it's the data model that's
>>>>  > different.
>>>>  > > >>> >
>>>>  > > >>> >  -Josh
>>>>  > > >>> >
>>>>  > > >>> >
>>>>  > > >>> >
>>>>  > > >>> >  --
>>>>  > > >>> >  The University of Edinburgh is a charitable body, registered in
>>>>  > > >>> >  Scotland, with registration number SC005336.
>>>>  > > >>> >
>>>>  > > >>> >
>>>>  > > >>> _______________________________________________
>>>>  > > >>> Moses-support mailing list
>>>>  > > >>> [email protected]
>>>>  > > >>> http://mailman.mit.edu/mailman/listinfo/moses-support
>>>>  > > >>>
>>>>  > > >>
>>>>  > > >>
>>>>  > > >> --
>>>>  > > >> barliant at {gmail.com, yahoo.com}
>>>>  > > >> Starting July 2008, barliant at cbn.net.id is no longer active
>>>>  > > >> Visit my Blog at barliant dot blogspot dot com
>>>>  > > >>
>>>>  > > >> _______________________________________________
>>>>  > > >> Moses-support mailing list
>>>>  > > >> [email protected]
>>>>  > > >> http://mailman.mit.edu/mailman/listinfo/moses-support
>>>>  > > >>
>>>>  > > >
>>>>  > > >
>>>>  > >
>>>>  >
>>>>  >
>>>> _______________________________________________
>>>> Moses-support mailing list
>>>> [email protected]
>>>> http://mailman.mit.edu/mailman/listinfo/moses-support
>>>>
>>>
>>
>
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