Hi David,
As you point out, the ability to use nested alias files would be quite
useful. mpiblast doesn't support this at the moment, although it could
be implemented.
We had a discussion on this topic last August and I don't think much has
changed since then:
http://sourceforge.net/mailarchive/forum.php?thread_id=8014263&forum_id=43689
If it's possible to format all sequences as a single database, then a GI
list may be used to select certain portions of the database.
-Aaron
david coornaert wrote:
Hello
I have working mpiformatdb'ed DB, namely est_fun and est_hum
for each exists a <name>.nal and <name>.mbf
and they are working individually very well
I tried doing a test farm
and wrote this test.nal file
TITLE a fake title
DBLIST /path/to/db/est_fun /path/to/db/est_hum
but without success
although they work perfectly well with regular blast
My question is simple, is it possible to have farming of DB with
mpiblast ?
if so what's the trick ?
I'm used to have farms of farms of farms.. when using regular blast
and this is currently preventing me of using mpiblast
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