i think i have a problem to set the environment variable for mpiblast. MPIBLAST_SHARED and MPIBLAST_LOCAL. I am already set in .ncbirc file created by me at home directory as well as in ncbi directory but i failed to get output. so can u tell me when i have to make .ncbirc file and what i have to write in it.
With Best Regards, Ankit Patel __________________________________________________ Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam protection around http://mail.yahoo.com
$ mpirun -np 24 mpiblast -p blastn -d mm_ref_chr_intergenic.db -i ../hs_ref_chr01.IG -o mpi_hs_ref_chr01.txt FaFatal Error: Unable to read mpiBLAST shared storage path from either .ncbirc or the MPIBLAST_SHARED environment variable. The mpiBLAST configuration in .ncbirc should look like: [mpiBLAST] Shared=/path/to/shared/storage Local=/path/to/local/storage tal Error:F FUnablFatal Error:e to raead tFatal Error: Unable to read mpiBLAST shared Unable to read mpiBLAST shared storage path from eitherFatal Error: Fatal Error:Fatal Error:Unable to re Unable to read mp Unable to read mpiBLAST Fatal Error: shared storage path frUnable to reaaFatal Error:Fatal Error: Unable to read mp Unable to riBLAST shared storaead mpiBLAST shared l storage path from either .ncbirc or the MPI .ncbirc or the MPIBLAST_SHARED environment vFatal Error: Unable to read mpiBLAST shared storage path from either .ncbirc or the MPIBLAST_SHARED environment variable. The mpiBLAST configuration in .ncbirc should look like: [mpiBLAST] Shared=/path/to/shared/storage Local=/path/to/local/storage ariable. The mpiBLAST conFatal Error: Unable to read mpiBLAST shared storage path from either .ncbirc or the MPIBLAST_SHARED environment variable. The mpiBLAST configuration in .ncbirc should look like: [mpiBLAST] Shared=/path/to/Fatal Error: Unable to read mpiBLAST shared storage path from either .ncbirc or the MPIBLAST_SHARED environment variable. The mpiBLAST configuration in .ncbirc should look like: [mpiBLAST] Shared=/path/to/shared/storage Local=/path/to/local/storage BLAST_SHARED environment variable. The mpiBLAST coad mpiBLAST shared storaFatal Error: Unable to read mpiBLAST shared storage path from either .ncbirc or the MPIBLAST_SHARED environment variable. The mpiBLAST configuration in .ncbirc should look like: [mpiBLAST] Shared=/path/to/ge path from eitheiBLAST shared storagom either .ncbirc or the MPIBLAST_SHARED enr .ncbirc or the e path from either .ncbirc or the d mpiBLAST shared storage path from either .ncbirc or Evironmentge path from eitherstorage path from either .n .ncbirc or thcbie MPIBLASrc or the MPIBLAST_SHAREr variable. The mpiBLAST configuration in .ncbirc should lofiguration in .ncbirc should lrook like: [mpiBLAST] nfiguration in .ncbirc should lShared=/path/to/shared/storage Local=/pathshared/storage Local=/path/to/local/storage shared/storage Local=/path/to/local/storage ook like: [mpiBLAST] ShareMPIBLAST_SHARED environment MPIBLAST_SHAok like: [mpiBLAST] Shared=/path/to/shared/storage Local=variable. TRED environment varithe MPIBLAST_SHARED environment variable. The mpiBLAST o/path/to/loT_SHARED environmD environment variabent variable. Thele. The mpiBLAST conf mpiBLAST coniguration in .rcal/storage /to/local/storage :atal Error:d=/pa Unable to read mpiBLAST th/to/shared/storage Local=/path/to/local/storage Fatal he mpiBLAST configurable. TheFatal Error:ation in . mpiBLAST configuconfiguration in .ncbirc should loo Unfiguration inncbirc should .ncbirc shlook like:ould look l [mpiBLASUable to readshared stornage path from either .nEcbirc or the MPIBLAST_SHARED environrror: ncbirc should lookration in mpiBLAST like:.ncbirc should lok like: [mpiBLAST] Shared=/path/to/shara shared ike: [mpiBLAST] SharedT] Shared=/pa=/path/to/th/to/shared/shared/ststorage Local=/bstoragment variable. Tlhe mpiBLAST configuration in .ncUnable birc shouto read mpiBLAST shared storage [mpiBLAST] Shared=/pathok like: [e path from either .ncbirc or the MPIBLAST_SHARED environ/to/sharedmpiBLAST] Shared=/pathed/storage Local=/path/to/local/storage Fatal Error:ement variable. The mpiBLAST configuration in .ncbirc should loooragpath/to/loce Local=/pal/storage ath/to/locaFatal E k like: [mpiBLAST] Shared=/path/to/shared/storageld look likte: [mpiBLAST] path frShared=/pom either ./storage Loca/to/s Local=/path/tl=/path/hared/storage Unable to reaoo/local/storage l/storage rror:Fatal E rror:Unable to ath/to/shared/storagre Local=/pncbiath/to/local/storage rc or the MPIBLAST_SHARED eto/local/storage Local=/path/to/loc al/storage d mpiBLAST shared storage path from either .ncbirc or the MPIBLAST_SHARED environment variable. The mpiBLAST configuratione Uread mnable to repiBLAST ad mshared storage path from eithadnvironment variable. The mpiFatal Error:Fatal Error: U in .ncbirc should look like: [mpiBLAST piBLAST shared ster .ncbir] Shared=/path/to/shared/sorage path from either .ncbirc or the MPIBLc or the AST_SHMPIBLASTmpBLAST configuration in .ncbirc shouldnable to read mpiBLAUnable to rST sharead mpiBLAtorage Local=/path/to/local/storage iARED envir_SHAonment variable. The mpiBLAST configuration in RED envi.ncbirronment variable. The mpiBLASTBL look like: [mpiBLAST] Shaed storage path froST shared storagem either .ncb path from either .ncAc should configuralook like: [mpiBLAST] Shared=/path/to/shared/tion in storage .ncbSTred=/path/irc or thto/shared/storage Local=/path/to/local/se MPbirc or the MPIBLAST_SHARED environmeIBLAST_SHARnt variab Lirc shoulocal=/pathd look like: [mpiBLAST] Shared/to/local/storage =/path/toshtorage ED environment varile. The mpiBLAST configuration in .ncbirc should look able. The mpiBLAST confilike: [mpa/shared/storage Local=reguration in iBLAST] Shared=/p.ncbircdath/to/shared/stora/path/to/local/storage s shge Local=/path/to/local/storage ould look like: [mptoriBLAST] Shared=/path/to/shared/storage Loagecal=/path/to/local/storage path from either .ncbirc or the MPIBLAST_SHARED environment variable. The mpiBLAST configuration in .ncbirc should look like: [mpiBLAST] Shared=/path/to/shared/storage Local=/path/to/local/stor----------------------------------------------------------------------------- age One of the processes started by mpirun has exited with a nonzero exit code. This typically indicates that the process finished in error. If your process did not finish in error, be sure to include a "return 0" or "exit(0)" in your C code before exiting the application. FPID 5953 failed on node n0 (10.10.0.1) with exit status 1. ----------------------------------------------------------------------------- atal Error: Unable to read mpiBLAST shared storage path from either .ncbirc or the MPIBLAST_SHARED environment variable. The mpiBLAST configuration in .ncbirc should look like: [mpiBLAST] Shared=/path/to/shared/storage Local=/path/to/local/storage
