Hi Lucas, By using mpirun with -v command i got the output that on all machine mpiblast was running but when i was going on all machines than i found that mpiblast was running on only my master machine. On other machines mpiblast process was not running.
In attachment i am sending you lamboot -d , lamhalt -d (when running lamd), lamnodes, mpirun and mpiblast command output with -v option and all files in local directory as mentioned in MPIBLAST_LOCAL variable on all machines. --- Lucas Carey <[EMAIL PROTECTED]> wrote: > Hi Ankit, > This is probably a problem with the way lam is > setup. > what is the output of > lamhalt -d (if its already running) > lamboot -d > lamnodes > lamhalt -d > > If lam is setup correctly then mpiblast should run > on all nodes. > To get a list of the nodes that mpiblast is being > run on: > mpirun -v -np 24 .... mpiblast .... > > -Lucas > > > On Wednesday, April 12, 2006 at 03:01 -0700, ankit > patel wrote: > > > > Hi Lucas, > > Thanks for your help. Now i can run my > program mpiblast. But still i > > have question why mpiblast is not run on all > machines? I have 12 Sun > > fire v20z machines and each has two > processors. But when i am running > > my my job for 24 processors than it > execute randomaly not on all > > machines. It used hardely 8-9 processors at one > time. > > I used lam-mpi 7.0. Is there any problem > with lam environment for > > mpiblast? > > Lucas Carey <[EMAIL PROTECTED]> wrote: > > > > Hi Ankit, > > Could you post the conents of your .ncbicr > file? > > Also, you can try passing them as environment > variables: > > mpirun -np 24 -x > > > MPIBLAST_SHARED=/where/ever,MPIBLAST_LOCAL=/local/storage > mpirun > > -Lucas > > On Sunday, April 09, 2006 at 23:39 -0700, > ankit patel wrote: > > > i think i have a problem to set the > environment > > > variable for mpiblast. MPIBLAST_SHARED and > > > MPIBLAST_LOCAL. I am already set in .ncbirc > file > > > created by me at home directory as well as > in ncbi > > > directory but i failed to get output. so > can u tell me > > > when i have to make .ncbirc file and what i > have to > > > write in it. > > > > > > With Best Regards, > > > > > > Ankit Patel > > > ------------------------------------------------------- > This SF.Net email is sponsored by xPML, a > groundbreaking scripting language > that extends applications into web and mobile media. > Attend the live webcast > and join the prime developer group breaking into > this new coding territory! > http://sel.as-us.falkag.net/sel?cmd=lnk&kid=110944&bid=241720&dat=121642 > _______________________________________________ > Mpiblast-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/mpiblast-users > With Best Regards, Ankit Patel __________________________________________________ Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam protection around http://mail.yahoo.com
lamboot.d
Description: 3336631209-lamboot.d
lamhalt.d
Description: 3254050153-lamhalt.d
lamnodes
Description: 202163905-lamnodes
mpirun-mpiblast-out
Description: 607725047-mpirun-mpiblast-out
local_dir
Description: 3279109064-local_dir
